API for vanhasseltlab/IMatlas
a tool for design and interpretation of metabolomics studies in immunology
| Global functions | |
|---|---|
| add_centrality | Man page Source code |
| add_gos | Man page Source code |
| add_layout | Man page Source code |
| add_metadata | Man page Source code |
| add_node_pvalues | Man page Source code |
| add_node_types | Man page Source code |
| add_precision | Man page Source code |
| add_vertice_colors | Man page Source code |
| adjust_folder | Man page Source code |
| calculate_pvalues | Source code |
| confirm_click | Source code |
| convert_ids_to_names | Source code |
| convert_names_to_ids | Source code |
| create_settings | Source code |
| data_filter | Source code |
| default_settings | Source code |
| example_graph | Man page Source code |
| filter_metabolites | Man page Source code |
| fishers_test | Source code |
| get_2d_scatter | Man page Source code |
| get_all_interactions | Source code |
| get_all_pathways | Source code |
| get_all_protein_gos | Source code |
| get_barplot | Source code |
| get_class | Source code |
| get_edge_ids | Source code |
| get_edge_shapes | Source code |
| get_edge_table | Source code |
| get_go_barplot | Source code |
| get_go_ids | Man page Source code |
| get_go_names | Man page Source code |
| get_gos | Source code |
| get_gos_per_protein | Source code |
| get_graph | Man page Source code |
| get_graph_summary | Man page Source code |
| get_heatmap_plot | Source code |
| get_ids_from_class | Source code |
| get_ids_from_pathways | Source code |
| get_ids_from_superclass | Source code |
| get_interactions | Source code |
| get_metabolite_ids | Man page Source code |
| get_metabolite_metadata | Man page Source code |
| get_metabolite_names | Man page Source code |
| get_metabolite_vertice_ids | Source code |
| get_mm_interactions | Source code |
| get_n_neighbours | Source code |
| get_node_summary | Man page Source code |
| get_node_table | Source code |
| get_options | Source code |
| get_pm_interaction_ids | Source code |
| get_pp_confidences | Source code |
| get_pp_interaction_ids | Source code |
| get_pp_interactions | Source code |
| get_process_summary | Man page Source code |
| get_process_table | Source code |
| get_protein_ids | Man page Source code |
| get_protein_names | Man page Source code |
| get_protein_vertice_ids | Source code |
| get_proteins_by_go | Man page Source code |
| get_proteins_by_goid | Man page Source code |
| get_sorted_interaction_names | Source code |
| get_superclass | Source code |
| get_vertice_id | Source code |
| harmonized_closeness | Source code |
| header_row | Source code |
| lipid_filter | Source code |
| load_data | Man page Source code |
| load_interaction_data | Source code |
| metabolic_process_summary | Man page Source code |
| metabolite_go_graph | Man page Source code |
| na_omit_list | Man page Source code |
| network_from_gos | Source code |
| normalized | Source code |
| read_file | Source code |
| remove_unconnected | Man page Source code |
| run_preprocessing | Man page Source code |
| run_shiny | Man page Source code |
| run_textmining | Man page Source code |
| server | Source code |
| side_bar_menu | Source code |
| to_gg_plot | Source code |
| to_graph | Source code |
| to_plotly | Man page Source code |
| ui | Source code |
| ui.top_row | Source code |
