Files in venelin/MGPMSimulations
Simulation Test for the Mixed Gaussian Phylogenetic Model

.Rbuildignore

.gitattributes

.gitignore

DESCRIPTION

MGPMSimulations.Rproj

NAMESPACE

data-raw/ConvertToAIC2_t5_N80_MGPM_A_F_all_bsub.sh

data-raw/DetectShifts_t5_MGPM_A_F_all.R data-raw/DetectShifts_t5_MGPM_A_F_best_clade_2.R data-raw/DetectShifts_t5_MGPM_A_F_best_clade_2_24h.R data-raw/DetectShifts_t5_MGPM_A_F_best_clade_2_RR.R data-raw/DetectShifts_t5_MGPM_A_F_best_clade_RR.R

data-raw/DetectShifts_t5_N159_MGPM_A_F_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N159_SCALAROU_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N159_SURFACE_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N318_MGPM_A_F_best_clade_2_RR_bsub.sh

data-raw/DetectShifts_t5_N318_MGPM_A_F_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N318_MGPM_A_F_best_clade_RR_bsub.sh

data-raw/DetectShifts_t5_N318_SCALAROU_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N318_SURFACE_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N638_MGPM_A_F_best_clade_2_RR_bsub.sh

data-raw/DetectShifts_t5_N638_MGPM_A_F_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N638_MGPM_A_F_best_clade_2_bsub_24h.sh

data-raw/DetectShifts_t5_N638_SCALAROU_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N638_SCALAROU_best_clade_2_bsub_24h.sh

data-raw/DetectShifts_t5_N638_SURFACE_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N638_SURFACE_best_clade_2_bsub_24h.sh

data-raw/DetectShifts_t5_N80_MGPM_A_F_all_bsub.sh

data-raw/DetectShifts_t5_N80_MGPM_A_F_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N80_SCALAROU_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N80_SURFACE_best_clade_2_bsub.sh

data-raw/DetectShifts_t5_N80_SURFACE_best_clade_2_mcs10_bsub.sh

data-raw/DetectShifts_t5_N80_surfaceFwdBwd_bsub.sh

data-raw/DetectShifts_t5_NULL_MGPM_A_F_best_clade_2_RR.R

data-raw/DetectShifts_t5_NULL_N638_MGPM_A_F_best_clade_2_RR_bsub.sh

data-raw/DetectShifts_t5_NULL_N80N318_MGPM_A_F_best_clade_2_RR_bsub.sh

data-raw/DetectShifts_t5_SCALAROU_best_clade_2.R data-raw/DetectShifts_t5_SCALAROU_best_clade_2_24h.R data-raw/DetectShifts_t5_SURFACE_best_clade_2.R data-raw/DetectShifts_t5_SURFACE_best_clade_2_24h.R data-raw/DetectShifts_t5_SURFACE_best_clade_2_mcs10.R data-raw/DetectShifts_t5_surfaceFwdBwd.R data-raw/FitModelFWithTrueShiftsOnPRCData_t5.R

data-raw/FitModelFWithTrueShiftsOnPRCData_t5_bsub.sh

data-raw/FitTrueModel_NoHint_t5.R

data-raw/FitTrueModel_NoHint_t5_bsub.sh

data-raw/FitTrueModel_t5.R

data-raw/FitTrueModel_t5_bsub.sh

data-raw/GenerateTestData_t5.R data-raw/GenerateTestData_t5_NULL.R

data/dtFig.rda

data/dtFigNULL.rda

data/dtSimulationFits.rda

data/dtSimulationFitsNULL.rda

data/fitTypesBigger80.rda

data/fits_MGPM_A_F_all_AIC2_t5.rda

data/fits_MGPM_A_F_all_AIC_t5.rda

data/fits_MGPM_A_F_best_clade_2_AIC_t5.rda

data/fits_MGPM_A_F_best_clade_2_RR_AIC_t5.rda

data/fits_MGPM_A_F_best_clade_2_RR_t5_NULL.rda

data/fits_MGPM_A_F_best_clade_RR_AIC_t5.rda

data/fits_ModelFWithTrueShiftsOnPRCData_t5.rda

data/fits_SCALAROU_best_clade_2_AIC_t5.rda

data/fits_SURFACE_best_clade_2_AICc_mcs10_t5.rda

data/fits_SURFACE_best_clade_2_AICc_t5.rda

data/fits_TrueModels_t5.rda

data/fits_surface_bwd_t5.rda

data/fits_surface_fwd_t5.rda

data/resultData_t5_fitTrueModels.rda

data/testData_t5.rda

data/testData_t5_NULL.rda

data/testData_t5_NULL_fittedIds.rda

data/testData_t5_fittedIds.rda

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/index.html

docs/reference/is.BM.html

inst/CITATION

man/is.BM.Rd

vignettes/REFERENCES.bib

venelin/MGPMSimulations documentation built on July 20, 2019, 11:03 p.m.

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venelin/MGPMSimulations
Simulation Test for the Mixed Gaussian Phylogenetic Model

Files in venelin/MGPMSimulations
Simulation Test for the Mixed Gaussian Phylogenetic Model

R Package Documentation

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We want your feedback!

venelin/MGPMSimulations Simulation Test for the Mixed Gaussian Phylogenetic Model

Files in venelin/MGPMSimulations Simulation Test for the Mixed Gaussian Phylogenetic Model

R Package Documentation

Browse R Packages

We want your feedback!

venelin/MGPMSimulations
Simulation Test for the Mixed Gaussian Phylogenetic Model

Files in venelin/MGPMSimulations
Simulation Test for the Mixed Gaussian Phylogenetic Model