Files in venelin/toyepidemic
Simulating epidemics with within-host strain mutation and between-host SIR dynamics
.Rbuildignore
.gitignore
COPYING
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/ToyEpidemic.R
README.Rmd
README.md
_pkgdown.yml
docs/articles/REFERENCES-R.bib
docs/articles/REFERENCES.bib
docs/articles/UserGuide.html
docs/articles/UserGuideCache.RData
docs/articles/UserGuide_files/figure-html/unnamed-chunk-13-1.png
docs/articles/UserGuide_files/figure-html/unnamed-chunk-14-1.png
docs/articles/UserGuide_files/figure-html/unnamed-chunk-15-1.png
docs/articles/UserGuide_files/figure-html/unnamed-chunk-4-1.png
docs/articles/UserGuide_files/figure-html/unnamed-chunk-7-1.png
docs/articles/UserGuide_files/figure-html/unnamed-chunk-8-1.png
docs/articles/epid1.RData
docs/articles/index.html
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/calcValue.html
docs/reference/decomposeTrait.html
docs/reference/decomposeVar.html
docs/reference/extractDRCouples.html
docs/reference/extractPop.html
docs/reference/extractTree.html
docs/reference/generateGenotypes.html
docs/reference/generateRateTransTemplate.html
docs/reference/index.html
docs/reference/newgennxNorm.html
docs/reference/normReactPlot.html
docs/reference/simulateEpidemic.html
inst/CITATION
man/calcValue.Rd
man/decomposeTrait.Rd
man/decomposeVar.Rd
man/extractDRCouples.Rd
man/extractPop.Rd
man/extractTree.Rd
man/generateGenotypes.Rd
man/generateRateTransTemplate.Rd
man/newgennxNorm.Rd
man/normReactPlot.Rd
man/simulateEpidemic.Rd
src/RcppExports.cpp
src/utilities.cpp
tests/test-all.R
tests/testthat/test-SimulateToyModel.R
tests/testthat/test-utilities.R
toyepidemic.Rproj
vignettes/REFERENCES-R.bib
vignettes/REFERENCES.bib
vignettes/UserGuide.Rmd
vignettes/epid1.RData
