villandre/CovidClusterAlgo: Library for Clustering Sequencing Data with the CovidCovariateCluster algorithm.
Designed specifically for SARS-Cov-2 sequencing data, but usable for any other pathogen. The packages uses MCMC to derive the posterior estimates of different phylogenies. It then produces an optimal partition of the sequences into transmission clusters by scoring all potential partitions in the highest posterior probability phylogenies.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Luc Villandr\'{e} |
| Maintainer | Luc Villandr\'{e} <luc.villandre@hec.ca> |
| License | GPL-3 |
| Version | 0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
