vincent10kd/polygenic: Efficient and User-friendly P+T Polygenic Risk Score Creation with Summary Statistics
An efficient and user-friendly pipeline to retrieve trait-related genetic variants (including pQTLS) previously identified in genome-wide association studies (GWAS), to quickly extract them from chromosome .vcf files and Tabix files, and to convert them into a pruning + thresholding polygenic risk score (PRS) based on GWAS summary statistics.
Getting started
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Package details |
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| Author | Vincent ten Cate, PhD |
| Maintainer | Vincent ten Cate, PhD <vincent10kd@gmail.com> |
| License | GPL-3 |
| Version | 0.8.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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