Man pages for vincent10kd/polygenic
Efficient and User-friendly P+T Polygenic Risk Score Creation with Summary Statistics
| create_prs | Pruning+thresholding polygenic risk score creation based on... |
| extract_variants | Targeted extraction of variants from .vcf files using Tabix... |
| get_pQTLs | Retrieve protein quantitative trait loci (pQTLs) with summary... |
| get_trait_variants | Retrieve trait-related variants and summary statistics from... |
| init_gwas_dbs | Retrieve a current list of all queryable traits in the GWAS... |
| marg2con | Obtain conditional estimates from marginal estimates and a... |
| pQTL_list | Protein quantitative trait loci (pQTLs) for 1397 proteins,... |
| prs_grid | Create a grid of polygenic risk scores with different tuning... |
| prs_pipeline | User-friendly pipeline to retrieve variants and convert them... |
| stacked_prs | Stacked P+T polygenic risk scores by regularized regression |
