.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/GetSimOutput.R
R/SimulateLobsterMovement.R
R/catchability.R
R/data.R
R/directionalMove.R
R/dispersion.R
R/distanceToClosestTrap.R
R/distanceToTrapCalculator.R
R/globals.R
R/initialLobsterGrid.R
R/randomMove.R
R/replicateCoordinates.R
R/rpoisD.R
R/trapInPath.R
R/updateGrid.R
README.md
ResultsVisulaization.R
data/LobsterSizeFreqs.rda
inst/extdata/LobsterSizeFreqs.csv
inst/extdata/packageRun.R
lobsterCatch.Rproj
man/GetSimOutput.Rd
man/LobsterSizeFreqs.Rd
man/SimulateLobsterMovement.Rd
man/catchability.Rd
man/directionalMove.Rd
man/dispersion.Rd
man/distanceToClosestTrap.Rd
man/distanceToTrapCalculator.Rd
man/initialLobsterGrid.Rd
man/randomMove.Rd
man/replicateCoordinates.Rd
man/rpoisD.Rd
man/trapInPath.Rd
man/updateGrid.Rd
packageRun.R
results/.gitignore
results/Results_dstep01_L1.RDS
results/Results_dstep10_L1.RDS
results/Results_dstep11_L1.RDS
results/Results_dstep12_L1.RDS
results/Results_dstep13_L1.RDS
results/Results_dstep14_L1.RDS
results/Results_dstep15_L1.RDS
results/Results_dstep16_L1.RDS
results/Results_dstep1_L1.RDS
results/Results_dstep2_L1.RDS
results/Results_dstep3_L1.RDS
results/Results_dstep4_L1.RDS
results/Results_dstep5_L1.RDS
results/Results_dstep6_L1.RDS
results/Results_dstep7_L1.RDS
results/Results_dstep8_L1.RDS
results/Results_dstep9_L1.RDS
results/TrialSim_dstep01_L1.RDS
results/TrialSim_dstep10_L1.RDS
results/TrialSim_dstep11_L1.RDS
results/TrialSim_dstep12_L1.RDS
results/TrialSim_dstep13_L1.RDS
results/TrialSim_dstep14_L1.RDS
results/TrialSim_dstep15_L1.RDS
results/TrialSim_dstep16_L1.RDS
results/TrialSim_dstep1_L1.RDS
results/TrialSim_dstep2_L1.RDS
results/TrialSim_dstep3_L1.RDS
results/TrialSim_dstep4_L1.RDS
results/TrialSim_dstep5_L1.RDS
results/TrialSim_dstep6_L1.RDS
results/TrialSim_dstep7_L1.RDS
results/TrialSim_dstep8_L1.RDS
results/TrialSim_dstep9_L1.RDS
resultsVP/NewResults/Set_10_localdepletion.rds
resultsVP/NewResults/Set_11_localdepletion.rds
resultsVP/NewResults/Set_12_localdepletion.rds
resultsVP/NewResults/Set_13_localdepletion.rds
resultsVP/NewResults/Set_14_localdepletion.rds
resultsVP/NewResults/Set_15_localdepletion.rds
resultsVP/NewResults/Set_16_localdepletion.rds
resultsVP/NewResults/Set_17_localdepletion.rds
resultsVP/NewResults/Set_18_localdepletion.rds
resultsVP/NewResults/Set_19__localdepletion.rds
resultsVP/NewResults/Set_1_localdepletion.rds
resultsVP/NewResults/Set_20_localdepletion.rds
resultsVP/NewResults/Set_21_localdepletion.rds
resultsVP/NewResults/Set_22_localdepletion.rds
resultsVP/NewResults/Set_23_localdepletion.rds
resultsVP/NewResults/Set_24_localdepletion.rds
resultsVP/NewResults/Set_2_localdepletion.rds
resultsVP/NewResults/Set_3_localdepletion.rds
resultsVP/NewResults/Set_4_localdepletion.rds
resultsVP/NewResults/Set_5_localdepletion.rds
resultsVP/NewResults/Set_6_localdepletion.rds
resultsVP/NewResults/Set_7_localdepletion.rds
resultsVP/NewResults/Set_8_localdepletion.rds
resultsVP/NewResults/Set_9_localdepletion.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_10_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_11_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_12_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_13_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_14_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_15_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_16_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_1_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_2_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_3_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_4_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_5_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_6_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_7_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_8_resultdfcomplete.rds
resultsVP/NewResults/Varieddensity_Varieddstep_Saturation5/Set_9_resultdfcomplete.rds
resultsVP/NewResults/fig4.png
resultsVP/NewResults/fig6_moresimulations.png
resultsVP/NewResults/shrinkageImpact/Set1_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set2_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set3_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set4_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set5_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set6_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/Set7_varyingShrinkage.rds
resultsVP/NewResults/shrinkageImpact/fig9.png
resultsVP/oldresults/MLS70/MLS70-movement impact.png
resultsVP/oldresults/MLS70/mls70_dstep0.1_L1.rds
resultsVP/oldresults/MLS70/mls70_dstep0.5_L1.rds
resultsVP/oldresults/MLS70/mls70_dstep10_L1.rds
resultsVP/oldresults/MLS70/mls70_dstep1_L1.rds
resultsVP/oldresults/MLS70/mls70_dstep2_L1.rds
resultsVP/oldresults/MLS70/mls70_dstep5_L1.rds
resultsVP/oldresults/catchWt.png
resultsVP/oldresults/catchnumber.png
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep10_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep10_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep10_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep10_L1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep1_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep1_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep1_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep1_L1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep2_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep2_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep2_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep2_L1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep5_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep5_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep5_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/NosatResults_dstep5_L1.rds
resultsVP/oldresults/density&mobilityimpact/NoSaturation/density&movemnetCatchNo.png
resultsVP/oldresults/density&mobilityimpact/Results_dstep10_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep10_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep10_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep10_L1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep1_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep1_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep1_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep1_L1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep2_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep2_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep2_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep2_L1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep5_L0.1.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep5_L0.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep5_L1.5.rds
resultsVP/oldresults/density&mobilityimpact/Results_dstep5_L1.rds
resultsVP/oldresults/density&mobilityimpact/density&mobility.png
resultsVP/oldresults/densityimpact/Fig 4.png
resultsVP/oldresults/densityimpact/NoSaturation/6trapsTrial/dstep5_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/6trapsTrial/dstep5_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/6trapsTrial/dstep5_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/6trapsTrial/dstep5_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/Nosatlambda0.1dstep5.rds
resultsVP/oldresults/densityimpact/NoSaturation/Nosatlambda0.5dstep5.rds
resultsVP/oldresults/densityimpact/NoSaturation/Nosatlambda1.5dstep5.rds
resultsVP/oldresults/densityimpact/NoSaturation/Nosatlambda1dstep5.rds
resultsVP/oldresults/densityimpact/NoSaturation/Nosatlambda2dstep5.rds
resultsVP/oldresults/densityimpact/NoSaturation/Tstep15Trial/dstep5_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/Tstep15Trial/dstep5_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/Tstep15Trial/dstep5_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/Tstep15Trial/dstep5_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/NoSaturation/densityimapctCatchWt.png
resultsVP/oldresults/densityimpact/NoSaturation/densityimpactCatchNumber.png
resultsVP/oldresults/densityimpact/NoSaturation/dstep5_density1.6.rds
resultsVP/oldresults/densityimpact/Plot-Numberofcatch.png
resultsVP/oldresults/densityimpact/Plot-WeightCatch.png
resultsVP/oldresults/densityimpact/Tstep15Trial/Fig 4.png
resultsVP/oldresults/densityimpact/Tstep15Trial/dstep5_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/Tstep15Trial/dstep5_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/Tstep15Trial/dstep5_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/Tstep15Trial/dstep5_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/densityimpact/densityonCatchNo.png
resultsVP/oldresults/densityimpact/densityonCatchWt.png
resultsVP/oldresults/densityimpact/dstep5_density1.6.rds
resultsVP/oldresults/densityimpact/resultlambda0.1dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda0.2dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda0.3dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda0.4dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda0.5dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda1.5dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda1dstep5.rds
resultsVP/oldresults/densityimpact/resultlambda2dstep5.rds
resultsVP/oldresults/howclose0.01/dstep1_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Fig 6.png
resultsVP/oldresults/localdepletion/Timesteps15/dstep10_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep10_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep10_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep10_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep10_density1_saturation5_shrinkage0.993_OLD.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep1_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep1_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep1_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep1_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep1_density1_saturation5_shrinkage0.993_OLD.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep2_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep2_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep2_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep2_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep5_density0.1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep5_density0.5_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep5_density1.6_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep5_density1_saturation5_shrinkage0.993.rds
resultsVP/oldresults/localdepletion/Timesteps15/dstep5_density1_saturation5_shrinkage0.993_OLDrds
resultsVP/oldresults/localdepletion/Timesteps15/fig 6-IncreasedTimesteps.png
resultsVP/oldresults/localdepletion/dstep10_density0.06.rds
resultsVP/oldresults/localdepletion/dstep10_density0.1.rds
resultsVP/oldresults/localdepletion/dstep10_density0.5.rds
resultsVP/oldresults/localdepletion/dstep10_density1.6.rds
resultsVP/oldresults/localdepletion/dstep10_density1.rds
resultsVP/oldresults/localdepletion/dstep1_density0.06.rds
resultsVP/oldresults/localdepletion/dstep1_density0.1.rds
resultsVP/oldresults/localdepletion/dstep1_density0.5.rds
resultsVP/oldresults/localdepletion/dstep1_density1.6.rds
resultsVP/oldresults/localdepletion/dstep1_density1.rds
resultsVP/oldresults/localdepletion/dstep2_density0.06.rds
resultsVP/oldresults/localdepletion/dstep2_density0.1.rds
resultsVP/oldresults/localdepletion/dstep2_density0.5.rds
resultsVP/oldresults/localdepletion/dstep2_density1.6.rds
resultsVP/oldresults/localdepletion/dstep2_density1.rds
resultsVP/oldresults/localdepletion/dstep5_density0.06.rds
resultsVP/oldresults/localdepletion/dstep5_density0.1.rds
resultsVP/oldresults/localdepletion/dstep5_density0.5.rds
resultsVP/oldresults/localdepletion/dstep5_density1.6.rds
resultsVP/oldresults/localdepletion/dstep5_density1.rds
resultsVP/oldresults/variedSaturation/Fig 7.png
resultsVP/oldresults/variedSaturation/dstep5_density0.5_saturation1.rds
resultsVP/oldresults/variedSaturation/dstep5_density0.5_saturation10.rds
resultsVP/oldresults/variedSaturation/dstep5_density0.5_saturation5.rds
resultsVP/oldresults/variedSaturation/dstep5_density1.6_saturation1.rds
resultsVP/oldresults/variedSaturation/dstep5_density1.6_saturation10.rds
resultsVP/oldresults/variedSaturation/dstep5_density1.6_saturation5.rds
resultsVP/oldresults/variedSaturation/dstep5_density1_saturation1.rds
resultsVP/oldresults/variedSaturation/dstep5_density1_saturation10.rds
resultsVP/oldresults/variedSaturation/dstep5_density1_saturation5.rds
resultsVP/oldresults/variedshrinkage/Fig 9.png
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage0.95.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage0.96.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage0.97.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage0.98.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage0.99.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.1_saturation5_shrinkage1.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage0.95.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage0.96.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage0.97.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage0.98.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage0.99.rds
resultsVP/oldresults/variedshrinkage/dstep5_density0.5_saturation5_shrinkage1.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage0.95.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage0.96.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage0.97.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage0.98.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage0.99.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1.6_saturation5_shrinkage1.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage0.95.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage0.96.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage0.97.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage0.98.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage0.99.rds
resultsVP/oldresults/variedshrinkage/dstep5_density1_saturation5_shrinkage1.rds
temp.R