Files in wStockhausen/tmbTCSAM02
A set of tools to set up input for, run, and interact with output from, tmbTCSAM02 model runs.

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/convertTCSAMtoTMB_Params_RecruitmentInfo.R R/extractTCSAM_AggCatchData.R R/extractTCSAM_BoundedParameterInfo.R R/extractTCSAM_BoundedVectorInfo.R R/extractTCSAM_CatchData.R R/extractTCSAM_EffortData.R R/extractTCSAM_ParamInfoFisheries.R R/extractTCSAM_ParamInfoGrowth.R R/extractTCSAM_ParamInfoNaturalMortality.R R/extractTCSAM_ParamInfoRecruitment.R R/extractTCSAM_ParamInfoSelFunctions.R R/extractTCSAM_ParamInfoSurveys.R R/extractTCSAM_ParamInfoTerminalMolt.R R/extractTCSAM_PriorInfo.R R/extractTCSAM_ZCsCatchData.R R/parseTimeBlock.R R/readTCSAM.R R/readTCSAM_BioData.R R/readTCSAM_Datasets.R R/readTCSAM_FleetData.R R/readTCSAM_GrowthData.R R/readTCSAM_MaturityOgiveData.R R/readTCSAM_ModelConfiguration.R R/readTCSAM_ModelParametersInfo.R R/runTCSAM.R R/setGlobals.R R/subUndetermined.R README.md
inst/.DS_Store
inst/example21_13/.DS_Store
inst/example21_13/Data.BioInfo2020.inp
inst/example21_13/Data.Fishery2020.GF.AllGear.LN.TCDM.inp
inst/example21_13/Data.Fishery2020.RKF.LN.TC.NoSmallSS.inp
inst/example21_13/Data.Fishery2020.SCF.LN.TCDM.inp
inst/example21_13/Data.Fishery2020.TCF.LN.TC.inp
inst/example21_13/Data.Growth2000.EBS.inp
inst/example21_13/Data.MaleMaturityOgives2019.NMFS_M.inp
inst/example21_13/Data.Survey2019.NMFS_F.TC.inp
inst/example21_13/Data.Survey2019.NMFS_M.TC.inp
inst/example21_13/Data.Survey2019.SBS_BSFRF.Females.TCDM.inp
inst/example21_13/Data.Survey2019.SBS_BSFRF.Males.TCDM.inp
inst/example21_13/Data.Survey2019.SBS_NMFS.Females.TC.inp
inst/example21_13/Data.Survey2019.SBS_NMFS.Males.TC.inp
inst/example21_13/Datasets.2020.LN.TC_SomeDMs_SmallSSsRemoved.inp
inst/example21_13/M20.07.Options.FixedAvails.inp
inst/example21_13/M21.13.MCI.inp
inst/example21_13/M21.13.MPI.inp
inst/example21_13/tcsam02.pin
inst/exampleOld/M19F01.Data.2019.Fishery.GTF.inp
inst/exampleOld/M19F01.Data.2019.Fishery.RKF.inp
inst/exampleOld/M19F01.Data.2019.Fishery.SCF.inp
inst/exampleOld/M19F01.Data.2019.Fishery.TCF.inp
inst/exampleOld/M19F01.Data.2019.Growth.EBS.inp
inst/exampleOld/M19F01.Data.Bio.Info.inp
inst/exampleOld/M19F01.Options.inp
inst/exampleOld/M19F02.Data.2019.Survey.NMFS.MaleMaturityOgives.inp
inst/exampleOld/M19F03.Configuration.inp
inst/exampleOld/M19F03.Data.2019.Survey.NMFS_0.NotFit.inp
inst/exampleOld/M19F03.Data.2019.Survey.NMFS_F.inp
inst/exampleOld/M19F03.Data.2019.Survey.NMFS_M.inp
inst/exampleOld/M19F03.Datasets.inp
inst/exampleOld/M19F03.ParametersInfo.inp
inst/exampleOld/M19F03.Pin.M19F03.pin
inst/tmbTCSAM/.DS_Store
inst/tmbTCSAM/.dep.inc
inst/tmbTCSAM/Makefile
inst/tmbTCSAM/include/IndexFunctions.hpp
inst/tmbTCSAM/include/ModelConfig.hpp
inst/tmbTCSAM/include/Recruitment.hpp
inst/tmbTCSAM/include/SelectivityFunctions.hpp
inst/tmbTCSAM/include/tmbTCSAM.hpp
inst/tmbTCSAM/include/utils.hpp
inst/tmbTCSAM/nbproject/.gitignore
inst/tmbTCSAM/nbproject/Makefile-Debug.mk
inst/tmbTCSAM/nbproject/Makefile-Release.mk
inst/tmbTCSAM/nbproject/Makefile-impl.mk
inst/tmbTCSAM/nbproject/Makefile-variables.mk
inst/tmbTCSAM/nbproject/Package-Debug.bash
inst/tmbTCSAM/nbproject/Package-Release.bash
inst/tmbTCSAM/nbproject/configurations.xml
inst/tmbTCSAM/nbproject/project.xml
inst/tmbTCSAM/src/.DS_Store
inst/tmbTCSAM/src/.gitignore
inst/tmbTCSAM/src/tmbTCSAM.cpp
man/extractTCSAM_AggCatchData.Rd man/extractTCSAM_BoundedParameterInfo.Rd man/extractTCSAM_BoundedVectorInfo.Rd man/extractTCSAM_CatchData.Rd man/extractTCSAM_EffortData.Rd man/extractTCSAM_ParamInfoFisheries.Rd man/extractTCSAM_ParamInfoGrowth.Rd man/extractTCSAM_ParamInfoNaturalMortality.Rd man/extractTCSAM_ParamInfoRecruitment.Rd man/extractTCSAM_ParamInfoSelFunctions.Rd man/extractTCSAM_ParamInfoSurveys.Rd man/extractTCSAM_ParamInfoTerminalMolt.Rd man/extractTCSAM_PriorInfo.Rd man/extractTCSAM_ZCsCatchData.Rd man/parseTimeBlock.Rd man/readTCSAM_Datasets.Rd man/readTCSAM_FleetData.Rd man/readTCSAM_GrowthData.Rd man/readTCSAM_InputFiles.Rd man/readTCSAM_MaturityOgiveData.Rd man/readTCSAM_ModelConfiguration.Rd man/readTCSAM_ModelParametersInfo.Rd man/setGlobals.Rd man/subForKey.Rd testing.R
tmbTCSAM02.Rproj
wStockhausen/tmbTCSAM02 documentation built on July 17, 2021, 7:28 p.m.