Files in waldronlab/CNVRanger
Summarization and expression/phenotype association of CNV ranges
.Rbuildignore
.github/workflows/pr_check.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/CNVRanger-package.R
R/expr_assoc.R
R/graphical_representations.R
R/pheno_assoc.R
R/population_ranges.R
README.md
_pkgdown.yml
inst/CITATION
inst/REFERENCES.bib
inst/extdata/CNVOut.txt
inst/extdata/CNVOut_noMap.txt
inst/extdata/GBM_GISTIC_peaks.rda
inst/extdata/GT1068.cnv.txt.adjusted
inst/extdata/GT112.cnv.txt.adjusted
inst/extdata/GT1195.cnv.txt.adjusted
inst/extdata/GT1334.cnv.txt.adjusted
inst/extdata/GT175.cnv.txt.adjusted
inst/extdata/GT2391.cnv.txt.adjusted
inst/extdata/GT356.cnv.txt.adjusted
inst/extdata/GT546.cnv.txt.adjusted
inst/extdata/GT622.cnv.txt.adjusted
inst/extdata/GT911.cnv.txt.adjusted
inst/extdata/MapPenn.txt
inst/extdata/Parus_major_chr_sizes.txt
inst/extdata/Phen.txt
inst/extdata/Pheno.txt
inst/extdata/Silva16_PONE_CNV_calls.csv
inst/extdata/counts_cleaned.txt
man/cnvEQTL.Rd
man/cnvGWAS.Rd
man/cnvOncoPrint.Rd
man/figures/CNVRanger.png
man/figures/CNVsegments.png
man/figures/Expression.png
man/figures/Input.png
man/figures/Overlap.png
man/figures/Phenotype.png
man/figures/Summarization.png
man/generateGDS.Rd
man/importLrrBaf.Rd
man/plotEQTL.Rd
man/plotManhattan.Rd
man/plotRecurrentRegions.Rd
man/populationRanges.Rd
man/setupCnvGWAS.Rd
vignettes/CNVRanger.Rmd
