Global functions | |
---|---|
$,MultiAssayExperiment-method | Man page |
$<-,MultiAssayExperiment-method | Man page |
.DollarNames.MultiAssayExperiment | Source code |
.allIn | Source code |
.checkClass | Source code |
.checkDimnames | Source code |
.checkEqualPrimaries | Source code |
.checkExperimentList | Source code |
.checkExperimentListClasses | Source code |
.checkExperimentListNames | Source code |
.checkFixSampleMap | Source code |
.checkOverlapsAny | Source code |
.checkPrimaryOrder | Source code |
.checkSampleMapNamesClass | Source code |
.checkSampleNames | Source code |
.chr2fxn | Source code |
.doMatching | Source code |
.dropEmpty | Source code |
.emptyAssays | Source code |
.fillEmptyExps | Source code |
.getDim | Source code |
.getHits | Source code |
.getMethErr | Source code |
.getRangedData | Source code |
.harmonize | Source code |
.hasOldAPI | Source code |
.id_sort_uniq | Source code |
.isEmpty | Source code |
.load_HDF5Array_package | Source code |
.longFormatANY | Source code |
.longFormatElist | Source code |
.mapOrderPrimary | Source code |
.matchAddColData | Source code |
.matchReorderSub | Source code |
.mergeColData | Source code |
.mergeMAE | Source code |
.metadataCOLS | Source code |
.metasize | Source code |
.msg | Source code |
.normarg_verbose | Source code |
.read_HDF5MultiAssayExperiment | Source code |
.rowIdx | Source code |
.sampleMapFromData | Source code |
.sampleMapFromExisting | Source code |
.serialize_HDF5MultiAssayExperiment | Source code |
.setNames | Source code |
.smapColumnCoerce | Source code |
.sortMetadata | Source code |
.splitArgs | Source code |
.subsetCOLS | Source code |
.subsetMultiAssayExperiment | Source code |
.subsetROWS | Source code |
.testMethodsTable | Source code |
.tryRowRanges | Source code |
.uniqueNamesInAssays | Source code |
.uniqueSortIdentical | Source code |
.validExperimentList | Source code |
.validMatchedAssayExperiment | Source code |
.validMultiAssayExperiment | Source code |
.warning | Source code |
.warnnomatch | Source code |
.wideFormatANY | Source code |
.write_HDF5MultiAssayExperiment | Source code |
.write_h5_dimnames | Source code |
DataFrame | Man page |
ExperimentList | Man page Source code |
ExperimentList-class | Man page |
HDF5MultiAssayExperiment | Man page |
MatchedAssayExperiment | Man page Source code |
MatchedAssayExperiment-class | Man page |
MultiAssayExperiment | Man page Source code |
MultiAssayExperiment-class | Man page |
MultiAssayExperiment-helpers | Man page |
MultiAssayExperiment-methods | Man page |
MultiAssayExperiment-package | Man page |
MultiAssayExperimentToMAF | Man page Source code |
[,MultiAssayExperiment,ANY,ANY,ANY-method | Man page |
[,MultiAssayExperiment,ANY-method | Man page |
[<-,MultiAssayExperiment,ANY,ANY,ANY-method | Man page |
[[,MultiAssayExperiment,ANY,ANY-method | Man page |
[[<-,MultiAssayExperiment,ANY,ANY-method | Man page |
anyReplicated | Man page |
anyReplicated,MultiAssayExperiment-method | Man page |
assay,ANY,missing-method | Man page |
assay,ExperimentList,character-method | Man page |
assay,ExperimentList,missing-method | Man page |
assay,ExperimentList,numeric-method | Man page |
assay,MultiAssayExperiment,character-method | Man page |
assay,MultiAssayExperiment,missing-method | Man page |
assay,MultiAssayExperiment,numeric-method | Man page |
assays,ExperimentList-method | Man page |
assays,MultiAssayExperiment-method | Man page |
c,MultiAssayExperiment-method | Man page |
coerce,List,ExperimentList-method | Man page |
coerce,List,MultiAssayExperiment-method | Man page |
coerce,MultiAssayExperiment,MatchedAssayExperiment-method | Man page |
coerce,list,ExperimentList-method | Man page |
coerce,list,MultiAssayExperiment-method | Man page |
coerce-ExperimentList | Man page |
coerce-MultiAssayExperiment | Man page |
coerceToExperimentList | Source code |
colData,MultiAssayExperiment-method | Man page |
colData<-,MultiAssayExperiment,ANY-method | Man page |
colData<-,MultiAssayExperiment,DataFrame-method | Man page |
colnames,ExperimentList-method | Man page |
colnames<-,MultiAssayExperiment,List-method | Man page |
colnames<-,MultiAssayExperiment,list-method | Man page |
complete.cases,MultiAssayExperiment-method | Man page |
dimnames,ExperimentList-method | Man page |
dimnames,MultiAssayExperiment-method | Man page |
drops | Man page |
drops,MultiAssayExperiment-method | Man page |
drops<- | Man page |
drops<-,MultiAssayExperiment-method | Man page |
experiments | Man page |
experiments,MultiAssayExperiment-method | Man page |
experiments<- | Man page |
experiments<-,MultiAssayExperiment,ExperimentList-method | Man page |
experiments<-,MultiAssayExperiment,List-method | Man page |
exportClass | Man page |
exportClass,MultiAssayExperiment-method | Man page |
getWithColData | Man page Source code |
hasAssay | Man page Source code |
hasRowRanges | Man page |
hasRowRanges,ExperimentList-method | Man page |
hasRowRanges,MultiAssayExperiment-method | Man page |
intersectColumns | Man page Source code |
intersectRows | Man page Source code |
isEmpty,ExperimentList-method | Man page |
isEmpty,MultiAssayExperiment-method | Man page |
length,MultiAssayExperiment-method | Man page |
listToMap | Man page Source code |
loadHDF5MultiAssayExperiment | Man page Source code |
longFormat | Man page Source code |
makeHitList | Man page Source code |
makeMatchList | Man page |
mapToList | Man page Source code |
mergeReplicates | Man page |
mergeReplicates,ANY-method | Man page |
mergeReplicates,ExperimentList-method | Man page |
mergeReplicates,MultiAssayExperiment-method | Man page |
metadata,MultiAssayExperiment-method | Man page |
metadata<-,MultiAssayExperiment-method | Man page |
miniACC | Man page |
names,MultiAssayExperiment-method | Man page |
names<-,MultiAssayExperiment-method | Man page |
prepMultiAssay | Man page Source code |
reexports | Man page |
renameColname | Man page Source code |
renamePrimary | Man page Source code |
replicated | Man page |
replicated,MultiAssayExperiment-method | Man page |
replicates | Man page |
replicates,MultiAssayExperiment-method | Man page |
rownames,ExperimentList-method | Man page |
sampleMap | Man page |
sampleMap,MultiAssayExperiment-method | Man page |
sampleMap<- | Man page |
sampleMap<-,MultiAssayExperiment,ANY-method | Man page |
sampleMap<-,MultiAssayExperiment,DataFrame-method | Man page |
saveHDF5MultiAssayExperiment | Man page Source code |
show,ExperimentList-method | Man page |
show,MultiAssayExperiment-method | Man page |
showReplicated | Man page |
showReplicated,MultiAssayExperiment-method | Man page |
splitAssays | Man page |
splitAssays,MultiAssayExperiment-method | Man page |
subset | Man page |
subsetBy | Man page |
subsetByAssay | Man page |
subsetByAssay,ExperimentList-method | Man page |
subsetByAssay,MultiAssayExperiment-method | Man page |
subsetByColData | Man page |
subsetByColData,MultiAssayExperiment,ANY-method | Man page |
subsetByColData,MultiAssayExperiment,character-method | Man page |
subsetByColumn | Man page |
subsetByColumn,ExperimentList,List-method | Man page |
subsetByColumn,ExperimentList,list-method | Man page |
subsetByColumn,ExperimentList,logical-method | Man page |
subsetByColumn,MultiAssayExperiment,ANY-method | Man page |
subsetByRow | Man page |
subsetByRow,ExperimentList,ANY-method | Man page |
subsetByRow,ExperimentList,List-method | Man page |
subsetByRow,ExperimentList,list-method | Man page |
subsetByRow,ExperimentList,logical-method | Man page |
subsetByRow,MultiAssayExperiment,ANY-method | Man page |
updateObject,MultiAssayExperiment-method | Man page |
upsetSamples | Man page Source code |
wideFormat | Man page Source code |
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