API for waldronlab/doppelgangR
Identify likely duplicate samples from genomic or meta-data
| Global functions | |
|---|---|
| .Owen | Source code |
| .checkSameEsets | Source code |
| .checkSameSets | Source code |
| .discretizeDataFrame | Source code |
| .getMatrixPair | Source code |
| DoppelGang | Man page |
| DoppelGang-class | Man page |
| colFinder | Man page Source code |
| corFinder | Man page |
| cp.to.dp | Source code |
| dmsn | Source code |
| dmst | Source code |
| doppelgangR | Man page |
| doppelgangR-package | Man page |
| dp.to.cp | Source code |
| dsn | Source code |
| dsn2.plot | Source code |
| dst | Man page |
| dst2.plot | Source code |
| gamma1.to.lambda | Source code |
| log.pt | Source code |
| msn.affine | Source code |
| msn.cond.plot | Source code |
| msn.conditional | Source code |
| msn.dev | Source code |
| msn.dev.grad | Source code |
| msn.fit | Source code |
| msn.marginal | Source code |
| msn.mle | Source code |
| msn.moment.fit | Source code |
| msn.quantities | Source code |
| mst.affine | Source code |
| mst.dev | Source code |
| mst.dev.grad | Source code |
| mst.fit | Source code |
| mst.mle | Man page |
| num.deriv1 | Source code |
| num.deriv2 | Source code |
| outlierFinder | Man page |
| phenoDist | Man page Source code |
| phenoFinder | Man page |
| plot,DoppelGang | Man page |
| plot,DoppelGang,ANY-method | Man page |
| plot,DoppelGang-method | Man page |
| plot-methods | Man page |
| plot.DoppelGang | Man page |
| plot.doppelgangR | Man page |
| pmsn | Source code |
| pmst | Source code |
| print,DoppelGang-method | Man page |
| psn | Source code |
| pst | Man page |
| qst | Man page |
| rmsn | Source code |
| rmst | Source code |
| rsn | Source code |
| rst | Man page |
| sample.centralmoments | Source code |
| show,DoppelGang-method | Man page |
| smokingGunFinder | Man page |
| sn.2logL.profile | Source code |
| sn.Einfo | Source code |
| sn.SFscore | Source code |
| sn.cumulants | Source code |
| sn.dev | Source code |
| sn.dev.gh | Source code |
| sn.em | Source code |
| sn.logL.grouped | Source code |
| sn.mle | Source code |
| sn.mle.grouped | Source code |
| sn.mmle | Source code |
| solvePD | Source code |
| st.2logL.profile | Source code |
| st.SFscore | Source code |
| st.cumulants | Source code |
| st.cumulants.inversion | Source code |
| st.dev.fixed | Source code |
| st.logL.grouped | Source code |
| st.mle | Man page Source code |
| st.mle.grouped | Source code |
| st.mmle | Source code |
| summary,DoppelGang-method | Man page |
| vectorHammingDist | Man page Source code |
| vectorWeightedDist | Man page |
| zeta | Source code |
