Files in waldronlab/nychanesmicrobiome
Analysis of the NYC-HANES Microbiome Specimens

.Rbuildignore

.github/.gitignore

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

NAMESPACE

R/abundance_plots.R R/annotateFactors.R R/diversity_plots.R R/edgeR_dotplots.R R/edgeR_tileplots.R R/get_edgeR_results.R R/loadQiimeData.R R/pilot_selection.R R/prettytable_functions.R README.md

_pkgdown.yml

html_docs/Tobacco exposure associated with oral microbiome anaerobiosis in the New York City Health and Nutrition Examination Study (NYC HANES) II.html

html_docs/Tobacco exposure associated with oral microbiome anaerobiosis in the New York City Health and Nutrition Examination Study (NYC HANES) II.pdf

html_docs/Tobacco exposure associated with oral microbiome anaerobiosis in the New York City Health and Nutrition Examination Study (NYC HANES) II_files/MathJax.js

inst/doc/sample_selection.txt

inst/extdata/HPV_results.xlsx

inst/extdata/Neisseria_MATRIX-COUNT.txt

inst/extdata/Prevotella_MATRIX-COUNT.txt

inst/extdata/Streptococcus_MATRIX-COUNT.txt

inst/extdata/biosis.tsv

inst/extdata/burklab_ids.tsv

inst/extdata/original_map.tsv

inst/extdata/otu_table_mc10_w_tax.biom

inst/extdata/public_v2_010518.sas7bdat

inst/extdata/rep_set.fna

inst/extdata/rep_set.tre