Files in wanyuac/handyR

Handy functions for R programming.

R/assoc__getBinaryCoefficient.R R/assoc__mkContingencyTable.R R/assoc__phiCoe.R R/assoc__simCoe.R R/assoc__testIndependency.R R/bioinf__countPanGenes.R R/bioinf__plotGeneAccumulationCurves.R R/bioinf__summariseSeqkitPEReadStats.R R/cumuCurve.R R/epi__epiLinksPatientIsolates.R R/epi__estimateCollectionDates.R R/epi__maxDaysBetweenDateRanges.R R/matrixCutoff.R R/maxRange.R R/phylo__distsPerClade.R R/phylo__getMRCAdates.R R/phylo__makeFastANIDistMatrix.R R/phylo__plotCI.R R/phylo__rmSubclades.R R/phylo__writePHYLIPmatrix.R R/seqDepth.R R/struc__df2matrix.R R/struc__makeNamedList.R R/struc__maskMatrix.R R/struc__matrix2df.R R/struc__sm.R R/struc__splitVec.R R/struc__subsetDfCon.R R/struc__tab2df.R R/struc__upperTriangleToSquareMatrix.R R/visual__Fishers_exact_test.R R/visual__buildNetwork.R R/visual__labelGenerator.R R/visual__plotMetaTree.R R/visual__scatterPlot.R README.md man/buildNetwork.Rd man/countPanGenes.Rd man/cumuCurve.Rd man/df2matrix.Rd man/distsPerClade.Rd man/epiLinksPatientIsolates.Rd man/estimateCollectionDates.Rd man/getBinaryCoefficient.Rd man/getMRCAdates.Rd man/labelGenerator.Rd man/makeFastANIDistMatrix.Rd man/makeNamedList.Rd man/maskMatrix.Rd man/matrix2df.Rd man/matrixCutoff.Rd man/maxDaysBetweenDateRanges.Rd man/maxRange.Rd man/mkContingencyTable.Rd man/phiCoe.Rd man/plotCI.Rd man/plotFishersP.Rd man/plotGeneAccumulationCurves.Rd man/plotMetaTree.Rd man/rmSubclades.Rd man/scatterPlot.Rd man/seqDepth.Rd man/simCoe.Rd man/sm.Rd man/splitVec.Rd man/subsetDfCon.Rd man/summariseSeqkitPEReadStats.Rd man/tab2df.Rd man/testIndependency.Rd man/upperTriangleToSquareMatrix.Rd man/writePHYLIPmatrix.Rd