Man pages for weizhouUMICH/SAIGE
Efficiently controlling for case-control imbalance and sample relatedness in single-variant assoc tests (SAIGE) and controlling for sample relatedness in region-based assoc tests in large cohorts and biobanks (SAIGE-GENE)
| CCT | An analytical p-value combination method using the Cauchy... |
| createSparseGRM | Construct a sparse GRM for a given data set |
| fitNULLGLMM | Fit the null logistic/linear mixed model and estimate the... |
| fit_SKAT_NULL | Fit the null logistic mixed model and estimate the variance... |
| SKATtest_usingSKATLib | Run single variant score tests with SPA based on the logistic... |
| SPAGMMATtest | Run single variant or gene- or region-based score tests with... |
