API for wgmao/NIFA
Non-negative Independent Factor Analysis for single cell RNA-seq
| Global functions | |
|---|---|
| ELBO_cal | Source code |
| NIFA | Man page Source code |
| S_2_expect_update | Source code |
| a_S_update | Source code |
| a_noise_update | Source code |
| b_S_update | Source code |
| b_noise_update | Source code |
| b_noise_update_fast | Source code |
| eta_A_update | Source code |
| eta_A_update_cycle | Source code |
| eta_A_update_cycle_fast | Source code |
| eta_A_update_fast | Source code |
| lambda_A_update | Source code |
| lambda_S_update | Source code |
| lambda_S_update_fast | Source code |
| lower_bound_2 | Source code |
| lower_bound_3 | Source code |
| lower_bound_9 | Source code |
| mean_A_expect_update | Source code |
| mu_A_update | Source code |
| mu_S_update | Source code |
| mu_S_update_fast | Source code |
| normF | Source code Source code |
| one_hot_encode | Source code |
| phi_S_update | Source code |
| pi_S_update | Source code |
| quick.elbow | Source code |
| rcoef | Source code |
| rho_S_update | Source code |
| rprops | Source code |
| sigma_A_update | Source code |
| sigma_S_update | Source code |
| simpleDecomp | Source code |
| simpleDecompGMM | Source code |
| simpleDecompHybrid | Source code |
| simpleDecompHybrid.ridge | Source code |
| simulateData | Source code |
| tscale | Source code |
| var_A_expect_update | Source code |
