whweve/IntAssoPlot2: visualize genome-wide association study with gene annotation and linkage disequiblism
IntAssoPlot, an R package, provides improved visual display of GWAS results in a publication-ready format. The main panel of a IntAssoPlot plot contains connecting line link the relative association p-values on the -log10 scale, the genome annotation, and the linkage disequiblism (LD) matrix. Inspection of the output image can provide important biological information including locis that passed the genome-wide significant threshold, genes harbored or located near the significant loci, and the extent of LD within the selected region.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Hongwei Wang [aut, cre] |
| Maintainer | Hongwei Wang <whweve@163.com> |
| License | GPL-2 | file LICENSE |
| Version | 1.0.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
