Man pages for william-denault/WaveletScreaming
A package to perform Wavelet Screening on GWAS data
| adaptative_EM_Lambda | EM procedure for sub tree |
| adaptative_Lambda | Likelihood ratio for sub tree |
| adaptative_Simu_Lambda_null | Simulation of Lambda null distribution on a sub tree |
| betas | Compute Beta value from Frequentist or Bayesian linear... |
| Cov_Beta | Compute posterior variance Beta value from Bayesian linear... |
| extract_tree | Extract sub result from the result of the wavelet_screening |
| fine_map | Definition of the regions with unthresholded Betas. |
| mapping | Defintion of the regions with Bayes factor over a threshold. |
| max_EM_post_Beta | Internal EM procedure |
| n_coef_wc | Number of wavelet coefficients for a given level of... |
| plot_WS | Data visualization for the output of Wavelet screening |
| prop_sub | Compute the relative size of a sub region. |
| Quantile_transform | Quantile transform |
| Search_lambda | Calibration of the hyperparameter |
| Simu_null_emp | Simulation of the null statistics |
| Simu_null_proxy | Simulation of the null statistics |
| slice_definition | Define chromosomal regions for screening |
| Wavelet_screening | Main function to perform wavelet screening |
| wavproc | Internal wavelet processing |
