Files in william0701/CeNetOmnibus
A Shiny based application for ceRNA network construction and analysis.

.Rbuildignore
.Rhistory
.Rproj.user/FD232EAE/console06/INDEX001
.Rproj.user/FD232EAE/cpp-definition-cache
.Rproj.user/FD232EAE/pcs/debug-breakpoints.pper
.Rproj.user/FD232EAE/pcs/files-pane.pper
.Rproj.user/FD232EAE/pcs/packages-pane.pper
.Rproj.user/FD232EAE/pcs/source-pane.pper
.Rproj.user/FD232EAE/pcs/windowlayoutstate.pper
.Rproj.user/FD232EAE/pcs/workbench-pane.pper
.Rproj.user/FD232EAE/persistent-state
.Rproj.user/FD232EAE/rmd-outputs
.Rproj.user/FD232EAE/saved_source_markers
.Rproj.user/FD232EAE/sources/prop/68549E70
.Rproj.user/FD232EAE/sources/prop/71C954CB
.Rproj.user/FD232EAE/sources/prop/73957970
.Rproj.user/FD232EAE/sources/prop/95FA6BC8
.Rproj.user/FD232EAE/sources/prop/D2B00E62
.Rproj.user/FD232EAE/sources/prop/D2E0055F
.Rproj.user/FD232EAE/sources/prop/F3806713
.Rproj.user/FD232EAE/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitattributes
.gitignore
CeNetOmnibus.Rproj
DESCRIPTION
NAMESPACE
R/CeNet.R R/checkDependency.R README.md
inst/app/demo/brca_subtype.csv
inst/app/demo/ceRNA_exp.txt
inst/app/demo/geneinfo.txt
inst/app/demo/hallmark.txt
inst/app/demo/micro_exp.txt
inst/app/demo/readme
inst/app/demo/target.txt
inst/app/global.R inst/app/server.R inst/app/ui.R
inst/app/www/Figures/CodingStatistic.svg
inst/app/www/Figures/Gene_Mapping_1.jpg
inst/app/www/Figures/Group_statistic.svg
inst/app/www/Figures/NoncodingStatistic.svg
inst/app/www/Figures/RNASampleFilter.svg
inst/app/www/Figures/RNA_Filter1.jpg
inst/app/www/Figures/Sample_Filter1.jpg
inst/app/www/Figures/Valid_Gene.png
inst/app/www/Figures/Value_trans1.png
inst/app/www/Figures/add_measurement.jpg
inst/app/www/Figures/bar_Module0_enrichment_plot_GO_BP.svg
inst/app/www/Figures/centrality1.jpg
inst/app/www/Figures/cox_table.jpg
inst/app/www/Figures/degree.jpg
inst/app/www/Figures/framework.svg
inst/app/www/Figures/hallmark.png
inst/app/www/Figures/km_curve.svg
inst/app/www/Figures/km_group.png
inst/app/www/Figures/measure_finish.jpg
inst/app/www/Figures/measure_panel.jpg
inst/app/www/Figures/microSampleFilter.svg
inst/app/www/Figures/microStatistic.svg
inst/app/www/Figures/module1.jpg
inst/app/www/Figures/module2.jpg
inst/app/www/Figures/module3.jpg
inst/app/www/Figures/module_summary.png
inst/app/www/Figures/network_summary.jpg
inst/app/www/Figures/network_visual.png
inst/app/www/Figures/point_Module0_enrichment_plot_GO_BP.svg
inst/app/www/Figures/survival.jpg
inst/app/www/Figures/thresh_1.jpg
inst/app/www/Program/CMI.R
inst/app/www/Program/Cograph.jar
inst/app/www/Program/ComputeCondition.R inst/app/www/Program/LA.R inst/app/www/Program/MI.R inst/app/www/Program/MS.R inst/app/www/Program/PCC.R
inst/app/www/Program/RunCograph.class
inst/app/www/R/analysis_tabServer.R inst/app/www/R/analysis_tabUI.R inst/app/www/R/construct_tabServer.R inst/app/www/R/construct_tabUI.R inst/app/www/R/customerUI.R inst/app/www/R/help_tabUI.R inst/app/www/R/input_tabServer.R inst/app/www/R/input_tabUI.R inst/app/www/R/process_tabServer.R inst/app/www/R/process_tabUI.R inst/app/www/R/visualization_tabUI.R
inst/app/www/css/bootstrap-editable.css
inst/app/www/css/bootstrap-table.min.css
inst/app/www/css/bootstrap.colorpickersliders.css
inst/app/www/css/ion.rangeSlider.min.css
inst/app/www/css/network-table.css
inst/app/www/css/select2-bootstrap-theme.css
inst/app/www/css/select2.min.css
inst/app/www/data/specials.rds
inst/app/www/help.html
inst/app/www/js/FileSaver.js
inst/app/www/js/all.js
inst/app/www/js/analysis.js
inst/app/www/js/base64toblob.js
inst/app/www/js/bootstrap-editable.js
inst/app/www/js/bootstrap-table.min.js
inst/app/www/js/bootstrap.colorpickersliders.js
inst/app/www/js/construction.js
inst/app/www/js/customerUI.js
inst/app/www/js/cytoscape.js
inst/app/www/js/filterProcess.js
inst/app/www/js/icheck.min.js
inst/app/www/js/ion.rangeSlider.min.js
inst/app/www/js/jquery.js
inst/app/www/js/jscolor.js
inst/app/www/js/process.js
inst/app/www/js/samplefilterprocess.js
inst/app/www/js/select2.min.js
inst/app/www/js/visualization.js
inst/app/www/skins/all.css
inst/app/www/skins/flat/_all.css
inst/app/www/skins/flat/aero.css
inst/app/www/skins/flat/aero.png
inst/app/www/skins/flat/aero@2x.png
inst/app/www/skins/flat/blue.css
inst/app/www/skins/flat/blue.png
inst/app/www/skins/flat/blue@2x.png
inst/app/www/skins/flat/flat.css
inst/app/www/skins/flat/flat.png
inst/app/www/skins/flat/flat@2x.png
inst/app/www/skins/flat/green.css
inst/app/www/skins/flat/green.png
inst/app/www/skins/flat/green@2x.png
inst/app/www/skins/flat/grey.css
inst/app/www/skins/flat/grey.png
inst/app/www/skins/flat/grey@2x.png
inst/app/www/skins/flat/orange.css
inst/app/www/skins/flat/orange.png
inst/app/www/skins/flat/orange@2x.png
inst/app/www/skins/flat/pink.css
inst/app/www/skins/flat/pink.png
inst/app/www/skins/flat/pink@2x.png
inst/app/www/skins/flat/purple.css
inst/app/www/skins/flat/purple.png
inst/app/www/skins/flat/purple@2x.png
inst/app/www/skins/flat/red.css
inst/app/www/skins/flat/red.png
inst/app/www/skins/flat/red@2x.png
inst/app/www/skins/flat/yellow.css
inst/app/www/skins/flat/yellow.png
inst/app/www/skins/flat/yellow@2x.png
inst/app/www/skins/futurico/futurico.css
inst/app/www/skins/futurico/futurico.png
inst/app/www/skins/futurico/futurico@2x.png
inst/app/www/skins/line/_all.css
inst/app/www/skins/line/aero.css
inst/app/www/skins/line/blue.css
inst/app/www/skins/line/green.css
inst/app/www/skins/line/grey.css
inst/app/www/skins/line/line.css
inst/app/www/skins/line/line.png
inst/app/www/skins/line/line@2x.png
inst/app/www/skins/line/orange.css
inst/app/www/skins/line/pink.css
inst/app/www/skins/line/purple.css
inst/app/www/skins/line/red.css
inst/app/www/skins/line/yellow.css
inst/app/www/skins/minimal/_all.css
inst/app/www/skins/minimal/aero.css
inst/app/www/skins/minimal/aero.png
inst/app/www/skins/minimal/aero@2x.png
inst/app/www/skins/minimal/blue.css
inst/app/www/skins/minimal/blue.png
inst/app/www/skins/minimal/blue@2x.png
inst/app/www/skins/minimal/green.css
inst/app/www/skins/minimal/green.png
inst/app/www/skins/minimal/green@2x.png
inst/app/www/skins/minimal/grey.css
inst/app/www/skins/minimal/grey.png
inst/app/www/skins/minimal/grey@2x.png
inst/app/www/skins/minimal/minimal.css
inst/app/www/skins/minimal/minimal.png
inst/app/www/skins/minimal/minimal@2x.png
inst/app/www/skins/minimal/orange.css
inst/app/www/skins/minimal/orange.png
inst/app/www/skins/minimal/orange@2x.png
inst/app/www/skins/minimal/pink.css
inst/app/www/skins/minimal/pink.png
inst/app/www/skins/minimal/pink@2x.png
inst/app/www/skins/minimal/purple.css
inst/app/www/skins/minimal/purple.png
inst/app/www/skins/minimal/purple@2x.png
inst/app/www/skins/minimal/red.css
inst/app/www/skins/minimal/red.png
inst/app/www/skins/minimal/red@2x.png
inst/app/www/skins/minimal/yellow.css
inst/app/www/skins/minimal/yellow.png
inst/app/www/skins/minimal/yellow@2x.png
inst/app/www/skins/polaris/polaris.css
inst/app/www/skins/polaris/polaris.png
inst/app/www/skins/polaris/polaris@2x.png
inst/app/www/skins/square/_all.css
inst/app/www/skins/square/aero.css
inst/app/www/skins/square/aero.png
inst/app/www/skins/square/aero@2x.png
inst/app/www/skins/square/blue.css
inst/app/www/skins/square/blue.png
inst/app/www/skins/square/blue@2x.png
inst/app/www/skins/square/green.css
inst/app/www/skins/square/green.png
inst/app/www/skins/square/green@2x.png
inst/app/www/skins/square/grey.css
inst/app/www/skins/square/grey.png
inst/app/www/skins/square/grey@2x.png
inst/app/www/skins/square/orange.css
inst/app/www/skins/square/orange.png
inst/app/www/skins/square/orange@2x.png
inst/app/www/skins/square/pink.css
inst/app/www/skins/square/pink.png
inst/app/www/skins/square/pink@2x.png
inst/app/www/skins/square/purple.css
inst/app/www/skins/square/purple.png
inst/app/www/skins/square/purple@2x.png
inst/app/www/skins/square/red.css
inst/app/www/skins/square/red.png
inst/app/www/skins/square/red@2x.png
inst/app/www/skins/square/square.css
inst/app/www/skins/square/square.png
inst/app/www/skins/square/square@2x.png
inst/app/www/skins/square/yellow.css
inst/app/www/skins/square/yellow.png
inst/app/www/skins/square/yellow@2x.png
man/CeNetOmnibus.Rd man/checkDependency.Rd
william0701/CeNetOmnibus documentation built on April 11, 2021, 9:38 a.m.