Man pages for winnie0521/qckit
| basic_stat | create a data frame of mean, median and quatiles of the... |
| contentcycle | Read results nucletoide sequence content matrix from gzipped... |
| GC_content | Extract GC content and construct a plot of GC content per... |
| hello | Hello, World! |
| kmer | Extract kmers and kmer counts from FASTQ file to a data frame |
| ncolumn | Calculate the number of sequences for Fastq file |
| nreads | Calculate the number of read for a given Fastq file |
| overrepresented_sequence | Sort all sequences per read by count along with a density... |
| overrepresented_sequence_50 | Sort all sequences per read by count along with a density... |
| plotall | Plot all plots about the FASTQ file and save them in a pdf as... |
| plot_perseq_quality | plot the mean quality score per read 'plot_perseq_quality'... |
| plot_quality_score.2 | Generate a boxplot of the per posistion quality score from... |
| plotSeqContent | Plot the per position nucleotide content 'plotSeqContent' |
| scorecycle | Read results quality score matrix from gzipped FASTQ file and... |
| seq_quantile | 'seq_quantile' Use seqTools to find the quantile of chosen... |
| sequence_content | Extract nucleoctide sequence content per position from fastq... |
| sequence_length | extract the sequence length per read and plot corresponding... |
