.RData
          
        
          
            
            .Rbuildignore
          
        
          
            
            .Rhistory
          
        
          
            
            .Rproj.user/AF5C549/cpp-definition-cache
          
        
          
            
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            .Rproj.user/AF5C549/sdb/s-B2CDC2DF/lock_file
          
        
          
            
            .Rproj.user/AF5C549/session-persistent-state
          
        
          
            
            .Rproj.user/AF5C549/viewer-cache/7C7EE4A1.Rdata
          
        
          
            
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            .Rproj.user/shared/notebooks/F6F20BA-PHP2550_HW4_WenyueXing/1/s/chunks.json
          
        
          
            
            .Rproj.user/shared/notebooks/paths
          
        
          
            
            DESCRIPTION
          
        
          
            
            Data/counts.csv
          
        
          
            
            Data/expt_design.csv
          
        
          
            
            EDA.Rproj
          
        
          
            
            NAMESPACE
          
        
          
            
            R/PCA.R
          
        
          
            
            R/annot_data.R
          
        
          
            
            R/biaboxplot.R
          
        
          
            
            R/generalfunctions.R
          
        
          
            
            R/ggMDSplot.R
          
        
          
            
            R/lapierre_rna_seq_analysis.R
          
        
          
            
            R/log_cpm_box.R
          
        
          
            
            R/log_cpm_heatmap.R
          
        
          
            
            R/log_cpm_mds.R
          
        
          
            
            R/log_cpm_pairplot.R
          
        
          
            
            R/raw_cpm_box.R
          
        
          
            
            R/raw_cpm_heatmap.R
          
        
          
            
            R/raw_cpm_mds.R
          
        
          
            
            R/read.data.R
          
        
          
            
            R/rnaseqfunctions.R
          
        
          
            
            man/hello.Rd
          
        
          
            
            tests/testthat.R
          
        
          
            
            tests/testthat/testannotate.R
          
        
          
            
            tests/testthat/testreaddata.R