Files in wokai/spliceSites

A bioconductor package for exploration of alignment gap positions from RNA-seq data

R/allClasses.r R/allGenerics.r R/c-methods.r R/dim-methods.r R/head-methods.r R/show-methods.r R/spliceSites.r man/SpliceCountSet-class.Rd man/aaGapSites-class.Rd man/addGeneAligns.Rd man/addHbond.Rd man/addMaxEnt.Rd man/alt_X_ranks.Rd man/annGapSites-class.Rd man/annotate-ExpressionSet.Rd man/annotation.Rd man/as.data.frame-methods.Rd man/c-methods.Rd man/cRanges-class.Rd man/caRanges-class.Rd man/cdRanges-class.Rd man/countByGeneName.Rd man/dim-methods.Rd man/dnaGapSites-class.Rd man/dnaRanges.Rd man/extractByGeneName.Rd man/extractRange.Rd man/gapSites-class.Rd man/gapSites.Rd man/getGapSites.Rd man/hbond-class.Rd man/head-methods.Rd man/initialize-methods.Rd man/keyProfiler-class.Rd man/lrCodons.Rd man/maxEnt-class.Rd man/merge-methods.Rd man/plotGeneAlignDepth.Rd man/rangeByGeneName.Rd man/readCuffGeneFpkm.Rd man/readExpSet.Rd man/readMergedBamGaps.Rd man/readTabledBamGaps.Rd man/seqlogo.Rd man/silic_tryp.Rd man/sortTable-methods.Rd man/spliceSites-package.Rd man/trim.Rd man/truncateSeq.Rd man/truncate_seq.Rd man/trypsinCleave.Rd man/uniqueJuncAnn.Rd man/write.files.Rd man/xCodons.Rd man/xJunc.Rd man/xJuncStrand.Rd man/z[-methods.Rd