Files in wolski/p3003PBC
Slides and R exercises for FGCZ Bioinformatics course
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/BHExtracted.R
R/hello.R
R/utilities.R
README.md
inst/BaseR_JG/p23554_workshop1_baseR.R
inst/BaseR_JG/p2691_combocourse_proteinGroups.txt
inst/fgcz_formatting/fgcz.css
inst/fgcz_formatting/fgcz_banner.png
inst/fgcz_formatting/fgcz_footer.html
inst/fgcz_formatting/fgcz_header.html
inst/images/AUC10_differentScores.png
inst/images/BH_Consistency.png
inst/images/BH_Plausibility.png
inst/images/BH_Specificity.png
inst/images/BatchEffect.png
inst/images/BestZoomBackground.png
inst/images/BetterZoom.png
inst/images/BuehlmanCausality.png
inst/images/CVvsSD.png
inst/images/Causal-Graph.png
inst/images/CausalNetworkSignalTransduction.png
inst/images/Causality.png
inst/images/Causality_2_Reichenbachs.png
inst/images/Causality_Mechanisms_3.png
inst/images/Causality_fromData.jpg
inst/images/Collider_statistics_.png
inst/images/Comfortable_Chair.jpg
inst/images/Confrounding_Wiki.png
inst/images/Contrasts_Volcano_p.value.adjusted_Model.pdf
inst/images/CourseStart_31_05_2021.png
inst/images/Course_31052021_9am.png
inst/images/Course_31_05_2021_8_43.png
inst/images/DIA_vs_LFQ.jpg
inst/images/Density_Intensities.png
inst/images/FDR_vs_FDP.png
inst/images/Final_Tweet.jpg.png
inst/images/Fischer_Exact_test.png
inst/images/GSEA.png
inst/images/HotdogKetchup.jpg
inst/images/Img_Confusion.png
inst/images/IntensitiesDensities.png
inst/images/IonStar_MQ_PD.jpg
inst/images/IonStar_Statistics_brms_model.png
inst/images/IonstarExp.png
inst/images/IrchelFGCZ.jpg
inst/images/JellyBeans_significant.png
inst/images/LFQDataUML.png
inst/images/LFQ_Improvement.jpg
inst/images/Linear_chair.jpg
inst/images/ListDichotom.png
inst/images/MQ-report-p2550-workunit_162368.pdf
inst/images/Man_In_The_Moon2.png
inst/images/Man_In_The_Moon_1.png
inst/images/Man_In_The_Moon_2.png
inst/images/Man_In_The_Moon_3.png
inst/images/Meeting_Agenda.png
inst/images/Meeting_Agenda_p1.png
inst/images/Meeting_Agenda_p2.png
inst/images/Meeting_Agenda_p3.png
inst/images/Milk-Tea-2m.jpg
inst/images/Moodel-PNG.png
inst/images/Multi_Test_Weight_example_1.png
inst/images/Multi_Test_Weight_example_2.png
inst/images/Multitest_pValue_FDR_Estimation.png
inst/images/Nobel2019.png
inst/images/OIG2.jpeg
inst/images/P1_GSEAEntry.png
inst/images/P2_GSEA_Internal.png
inst/images/P3_GSEA_Webgestalt.png
inst/images/QC_SD_ECDF.png
inst/images/QC_SD_Missigness_1.png
inst/images/QC_SD_SampleSize_Estimates.png
inst/images/QC_SD_distribution_function.png
inst/images/ROC_CURVE_015.png
inst/images/ROC_Curves.png
inst/images/R_logo.svg.png
inst/images/Ropeca.png
inst/images/Spider.png
inst/images/Spider_legs.png
inst/images/StatTIP_1.png
inst/images/Study_Type_Case_Control.png
inst/images/TypesOfInteractions.png
inst/images/TypesOfInteractions_NO.png
inst/images/TypesOfInteractions_Quali.png
inst/images/TypesOfInteractions_Quanti.png
inst/images/Untitled drawing (1).png
inst/images/Untitled drawing.png
inst/images/VariousTypesOfVariation.jpg
inst/images/VariousTypesOfVariation_Summary.jpg
inst/images/Volcano2Moderation.png
inst/images/VolcanoModerated.png
inst/images/Volcanos.png
inst/images/WhatToUse.png
inst/images/Z_plot.png
inst/images/allInteractions2x2.png
inst/images/blind_trials.png
inst/images/brussels.jpg
inst/images/chairDesign.jpg
inst/images/fgczgseaora.png
inst/images/hl_nullhypo_errors.png
inst/images/interactions_and_contrasts-spider_interactions1.png
inst/images/interactions_and_contrasts-spider_interactions2.png
inst/images/many-black-chair-backs.jpg
inst/images/pValueDistribution/bimodal_pvalues-1.png
inst/images/pValueDistribution/null_pvalues-1.png
inst/images/pValueDistribution/reg_pvalues-1.png
inst/images/pValueDistribution/unnamed-chunk-2-1.png
inst/images/pValueDistribution/various_pvalue_distributions-1.png
inst/images/test_chair.jpeg
inst/images/volcanoNotModerated.png
inst/images2021/Bergmann_Murdoch.png
inst/images2021/RepeatableExperiment.png
inst/images_2/FourElementalConfounds.png
inst/images_2/Heatmap_ALL.png
inst/images_2/Missigness.png
inst/images_2/after_normalization.png
inst/images_2/beforeNormalization.png
inst/images_2/heatmapAOVmodel1.png
inst/images_2/heatmapAOVmodel1_SimilarOnly.png
inst/images_2/heatmapmodel1ALL.png
inst/images_2/heatmapmodel1ALL_similarOnly.png
inst/images_2/proteinCounts.png
inst/pdf_versions/Experimental Design.pdf
inst/pdf_versions/Hypothesis Testing.pdf
inst/pdf_versions/Introduction to Linear Models.pdf
inst/pdf_versions/Introduction to R.pdf
inst/pdf_versions/Multiple Testing.pdf
inst/pdf_versions/Sample Size Estimation.pdf
inst/supplements/kxy021.pdf
inst/supplements/kxy021_supplementary_data.pdf
inst/xaringanTests/someOtherXaringang.Rmd
inst/xaringanTests/xamaring_test.Rmd
inst/xaringanTests/xaringan-decouple-code-plot.Rmd
man/hello.Rd
p3003PBC.Rproj
vignettes/.gitignore
vignettes/BioCED2019.Rmd
vignettes/BriefIntroductionTooR.Rmd
vignettes/ExpDesign.Rmd
vignettes/ExpDesignProteomics.Rmd
vignettes/GSEA_with_msig.Rmd
vignettes/Hypothesis_Testing_p3003.Rmd
vignettes/IntroductionToLinearModels.Rmd
vignettes/Multiplicity_p3003.Rmd
vignettes/OtherSoftware.Rmd
vignettes/SampleSizeEstimation.Rmd
vignettes/femaleMiceWeights.csv
vignettes/fgcz_banner.png
vignettes/fgcz_footer.html
vignettes/renderAllVignettest.R
vignettes/spider_wolff_gorb_2013.csv
vignettes/test_chair.jpeg
vignettes/trug-ggplot2.css
