Files in wschen/phemd

Phenotypic EMD for comparison of single-cell samples

LICENSE.md R/Phemd-methods.R R/functions-core.R R/functions-getResults.R R/functions-plotting.R R/zzz.R README.md man/GDM.Rd man/Phemd-methods.Rd man/Phemd.Rd man/aggregateSamples.Rd man/all_expn_data.Rd man/all_genes.Rd man/assignCellClusterNearestNode.Rd man/batchIDs.Rd man/bindSeuratObj.Rd man/celltypeFreqs.Rd man/clusterIndividualSamples.Rd man/compareSamples.Rd man/createDataObj.Rd man/drawColnames45.Rd man/embedCells.Rd man/gaussianffLocal.Rd man/generateGDM.Rd man/getArithmeticCentroids.Rd man/getCellYield.Rd man/getSampleCelltypeFreqs.Rd man/getSampleHistsByCluster.Rd man/getSampleSizes.Rd man/groupSamples.Rd man/heatmap_genes.Rd man/identifyCentroids.Rd man/monocleInfo.Rd man/orderCellsMonocle.Rd man/phateInfo.Rd man/plotCellYield.Rd man/plotEmbeddings.Rd man/plotGroupedSamplesDmap.Rd man/plotHeatmaps.Rd man/plotSummaryHistograms.Rd man/pooledCells.Rd man/printClusterAssignments.Rd man/rawExpn.Rd man/removeTinySamples.Rd man/retrieveRefClusters.Rd man/sNames.Rd man/selectFeatures.Rd man/selectMarkers.Rd man/selected_genes.Rd man/seuratInfo.Rd man/snames_data.Rd man/subsampledBool.Rd man/subsampledIdx.Rd vignettes/phemd.Rmd