Man pages for wyppeter/bbum
BBUM correction for significance testing of p values
| bbum | bbum: A package to account for secondary effects signal in... |
| BBUM_apply | Apply BBUM fitting and correction onto a data.frame |
| BBUM_corr | BBUM FDR correction of p values |
| BBUM_DEcorr | FDR correction of secondary effects and significance calling... |
| BBUM_default_lim | Default static limits for BBUM fitting |
| BBUM_distribution | Bi-beta-uniform mixture (BBUM) distribution |
| BBUM_expperf | Expected sensitivity and specificity by the BBUM model |
| BBUM_FDR | False discovery rate by the BBUM model |
| BBUM_fit | BBUM statistical modeling |
| BBUM_limapply | Rescaling guess values |
| BBUM_loglik | Log-likelihood for the BBUM model |
| BBUM_params_recoverLin | Transform fitting values to actual values |
| BBUM_params_toReal | Transform actual values to fitting values |
| BBUM_plot | QC and results graphs for the BBUM-processed results data... |
| BBUM_primfrac | Fraction of primary beta component under the BBUM model |
| BBUM_startgen | Generating guess values |
| BUM_distribution | Beta-uniform mixture (BUM) distribution |
| lin_rescale | Linear rescaling |
| logit | Logit function |
| pipe | Pipe operator |
| qbeta_a | Quantile function of beta distribution with b = 1 |
