API for xia-lab/NetworkAnalystR
NetworkAnalystR
| Global functions | |
|---|---|
| .connect.sqlite | Source code |
| .doAnnotation | Source code |
| .doGeneIDMapping | Source code |
| .doProbeMapping | Source code |
| .get.mSet | Source code |
| .getDynLoadPath | Source code |
| .gg_color_hue | Source code |
| .graph.eda | Source code |
| .graph.noa | Source code |
| .graph.sif | Source code |
| .loadEnrichLib | Source code |
| .parseListInput | Source code |
| .perform.computing | Source code |
| .performEnrichAnalysis | Source code |
| .prepareListSeeds | Source code |
| .prepareSigProteinJSON | Source code |
| .query.sqlite | Source code |
| .readDataTable | Source code |
| .removeDuplicates | Source code |
| .set.mSet | Source code |
| AnnotateGeneData | Source code |
| BuildMultiNet | Source code |
| BuildSeedProteinNet | Source code |
| CheckCor | Source code |
| ClearNetSelection | Source code |
| Compute.SteinerForest | Source code |
| ComputeColorGradient | Source code |
| ComputeIntegNet | Source code |
| ComputePCSFNet | Source code |
| ComputeSubnetStats | Source code |
| CreateGraph | Source code |
| DecomposeGraph | Source code |
| ExcludeNodes | Source code |
| ExcludeNodesOverall | Source code |
| ExpandNetworkSearch | Source code |
| ExportNetwork | Source code |
| ExtractModule | Source code |
| FilterBipartiNet | Source code |
| FilterByTissue | Source code |
| FilterNetByCor | Source code |
| FindCommunities | Source code |
| GetAllDataNames | Source code |
| GetBashFullPath | Source code |
| GetColorGradient | Source code |
| GetColorSchema | Source code |
| GetCurrentJson | Source code |
| GetDataListNames | Source code |
| GetFilesToBeSaved | Source code |
| GetGeneList | Source code |
| GetListEnrGeneNumber | Source code |
| GetMinConnectedGraphs | Source code |
| GetNetUploaded | Source code |
| GetNetsEdgeNum | Source code |
| GetNetsName | Source code |
| GetNetsNameString | Source code |
| GetNetsNodeNum | Source code |
| GetNetsQueryNum | Source code |
| GetNetworkTopology | Source code |
| GetNodeBetweenness | Source code |
| GetNodeDegrees | Source code |
| GetNodeIDs | Source code |
| GetNodeNames | Source code |
| GetNumOfLists | Source code |
| GetRCommandHistory | Source code |
| GetRidgePlot | Source code |
| GetSelectedNetworks | Source code |
| GetShortestPaths | Source code |
| Init.Data | Man page Source code |
| LoadRObjects | Source code |
| MapListIds | Source code |
| MapMultiListIds | Source code |
| PerformDataAnnot | Source code |
| PerformLayOut | Source code |
| PerformNetEnrichment | Source code |
| PerformRegEnrichAnalysis | Source code |
| PlotBetweennessHistogram | Source code |
| PlotCorHistogram | Source code |
| PlotDegreeHistogram | Source code |
| PrepareJsonFromR | Source code |
| PrepareNetwork | Source code |
| PrepareNetworkUpload | Source code |
| PrepareSignatureOfNetworkAnalyst | Source code |
| PrepareSqliteDB | Source code |
| PrepareSubnetDownloads | Source code |
| PrepareTheraNet | Source code |
| QueryCellCoexSQLite | Source code |
| QueryChemSQLite | Source code |
| QueryDiffNetSQLite | Source code |
| QueryDiseaseSQLite | Source code |
| QueryDrugSQLite | Source code |
| QueryMetSQLiteNet | Source code |
| QueryMirSQLite | Source code |
| QueryOtherPpiSQLite | Source code |
| QueryPpiSQLite | Source code |
| QueryTFSQLite | Source code |
| QueryTfmirSQLite | Source code |
| QueryTissueCoexSQLite | Source code |
| ReadGraphFile | Man page Source code |
| ReadList | Source code |
| ReadListFile | Source code Source code |
| RecordRCommand | Source code |
| RegisterData | Source code |
| RemoveData | Source code |
| RemoveDuplicates | Source code |
| SaveRCommands | Source code |
| SearchNetDB | Source code |
| SelectDataSet | Source code |
| Set.Config | Source code |
| SetAnalType | Source code |
| SetCellCoexNumber | Source code |
| SetCurrentData | Source code |
| SetDiffFilter | Source code |
| SetDiffNetName | Source code |
| SetListNms | Source code |
| SetNetType | Source code |
| SetOrganism | Source code |
| SetRankingMetric | Source code |
| SetSelMultiNet | Source code |
| SetSelNetDataset | Source code |
| SetSelectedFactorInx | Source code |
| ShowMemoryUse | Source code |
| UpdateNetworkLayout | Source code |
| UpdateSubnetStats | Source code |
| cbind_dif | Source code |
| checkfac | Source code |
| cleanMem | Source code |
| color_scale | Source code |
| community.significance.test | Source code |
| convertIgraph2JSON | Source code |
| convertIgraph2JSONFromFile | Source code |
| doEntrez2SymbolMapping | Source code |
| doEntrez2UniprotMapping | Source code |
| doEntrezIDAnot | Source code |
| doID2LabelMapping | Source code |
| doPpiIDMapping | Source code |
| fast.write | Source code |
| firstup | Source code |
| generate_breaks | Source code |
| getEntrezTableName | Source code |
| getGraphStatsFromFile | Source code |
| load_qs | Source code |
| my.reg.enrich | Source code |
| queryFilterDB | Source code |
| queryGeneDB | Source code |
| readDataset | Source code |
| readSet | Source code |
| regEnrichment | Source code |
| rescale2NewRange | Source code |
| saveNetworkInSIF | Source code |
| saveSet | Source code |
| scale_vec_colours | Source code |
