API for xia-lab/miRNetR
A companion R package for the miRNet web server
| Global functions | |
|---|---|
| .init.multilist | Source code |
| .my.slowreaders | Source code |
| .parseListData | Source code |
| .parsePickListItems | Source code |
| .query.sqlite | Source code |
| .readDataTable | Source code |
| .searchMultiNet_cir2mir | Source code |
| .searchMultiNet_disease2mir | Source code |
| .searchMultiNet_epi2mir | Source code |
| .searchMultiNet_gene2tf2mir | Source code |
| .searchMultiNet_lncrna2mir | Source code |
| .searchMultiNet_mir2gene | Source code |
| .searchMultiNet_mir2tf2gene | Source code |
| .searchMultiNet_molecule2mir | Source code |
| .searchMultiNet_protein2protein | Source code |
| .searchMultiNet_pseudogene2mir | Source code |
| .searchMultiNet_sncrna2mir | Source code |
| .searchMultiNet_tf2gene2mir | Source code |
| .searchMultiNet_tf2mir | Source code |
| .set.net.names | Source code |
| .to.numeric.mat | Source code |
| AutoNorm | Man page Source code |
| CalculateMirTargetSet | Man page Source code |
| CalculatePairwiseDiff | Man page Source code |
| CheckDetailsTablePerformed | Source code |
| CleanMemory | Man page Source code |
| CleanNumber | Source code |
| ClearFactorStrings | Man page Source code |
| ClearRCommandHistory | Source code |
| ClearStrings | Man page Source code |
| Compute.SteinerForest | Source code |
| ComputeColorGradient | Man page Source code |
| ComputePCSFNet | Man page Source code |
| ComputeSubnetStats | Man page Source code |
| CreateMirNets | Man page Source code |
| DecomposeMirGraph | Man page Source code |
| ExcludeNodes | Man page Source code |
| ExtractMirNetModule | Man page Source code |
| FilterMirNet | Man page Source code |
| FilterMirNetByList | Man page Source code |
| FindCommunities | Man page Source code |
| GetAnotNames | Man page Source code |
| GetBashFullPath | Man page Source code |
| GetClassInfo | Man page Source code |
| GetColorGradient | Man page Source code |
| GetColorSchema | Man page Source code |
| GetEnrResSetIDs | Source code |
| GetEnrResSetNames | Source code |
| GetEnrResultColNames | Source code |
| GetEnrResultMatrix | Source code |
| GetExtendRange | Man page Source code |
| GetFC | Man page Source code |
| GetMinConnectedGraphs | Man page Source code |
| GetMirResCol | Man page Source code |
| GetMirResRowNames | Man page Source code |
| GetNetNames | Man page Source code |
| GetNetNms | Man page Source code |
| GetNetStatByType | Man page Source code |
| GetNetStatColNames | Man page Source code |
| GetNetStatMatrix | Man page Source code |
| GetNetStats | Man page Source code |
| GetNetsNameString | Man page Source code |
| GetNetworkTopology | Man page Source code |
| GetNodeColNames | Source code |
| GetNodeGeneSymbols | Source code |
| GetNodeMat | Source code |
| GetNodeRowNames | Source code |
| GetQueryNum | Man page Source code |
| GetRCommandHistory | Man page Source code |
| GetRandomMirTargetGenes | Man page Source code |
| GetRandomXenoMirTargetGenes | Man page Source code |
| GetSeedsColumn | Man page Source code |
| GetSeq | Man page Source code |
| GetSeqnm | Man page Source code |
| GetSetIDLinks | Source code |
| GetShortestPaths | Man page Source code |
| GetSigGenes | Man page Source code |
| GetTableNames | Man page Source code |
| GetTtestP | Man page Source code |
| GetTypeNum | Man page Source code |
| GetUniqueClassNames | Man page Source code |
| GetUniqueDiseaseNames | Man page Source code |
| GetUniqueEntries | Man page Source code |
| GetUniqueEpigeneNames | Man page Source code |
| GetUniqueMoleculeNames | Man page Source code |
| GetUniqueSourceNames | Man page Source code |
| GetUniqueSpeciesNames | Man page Source code |
| GetUnmappedNum | Man page Source code |
| GetUpdateClassNames | Man page Source code |
| GetUpdateSpeNames | Man page Source code |
| Init.Data | Man page Source code |
| LoadClusterLib | Man page Source code |
| LoadDiseaseLib | Man page Source code |
| LoadFuncLib | Man page Source code |
| LoadGOLib | Man page Source code |
| LoadHMDDLib | Man page Source code |
| LoadKEGGLib | Man page Source code |
| LoadREACTOMELib | Man page Source code |
| LoadTFLib | Man page Source code |
| LoadTissueLib | Man page Source code |
| LoadmiRFamLib | Man page Source code |
| LogNorm | Man page Source code |
| PerformAPIMirTargetEnrichAnalysis | Man page Source code |
| PerformArrayDataNormalization | Man page Source code |
| PerformCircRNAMapping | Man page Source code |
| PerformCountDataNormalization | Man page Source code |
| PerformDataAnnot | Man page Source code |
| PerformDefaultEnrichment | Source code |
| PerformDisMapping | Man page Source code |
| PerformEdgeR | Man page Source code |
| PerformGeneAnnotation | Man page Source code |
| PerformHTqPCR | Man page Source code |
| PerformLayOut | Man page Source code |
| PerformLimma | Man page Source code |
| PerformLncRNAMapping | Man page Source code |
| PerformMir2EpiMapping | Man page Source code |
| PerformMirGeneMapping | Man page Source code |
| PerformMirTargetEnrichAnalysis | Man page Source code |
| PerformMolMapping | Man page Source code |
| PerformPseudoMapping | Man page Source code |
| PerformQpcrDataNormalization | Man page Source code |
| PerformSNPMirGeneMapping | Man page Source code |
| PerformSncRNAMapping | Man page Source code |
| PerformSpeciesMapping | Man page Source code |
| PerformTFMapping | Man page Source code |
| PerformXenoMirGeneMapping | Man page Source code |
| PlotBetweennessHistogram | Man page Source code |
| PlotDataOverview | Man page Source code |
| PlotDegreeHistogram | Man page Source code |
| PrepareCSV | Man page Source code |
| PrepareGraphML | Man page Source code |
| PrepareJsonFromR | Man page Source code |
| PrepareMirNet | Man page Source code |
| Query.miRNetDB | Man page Source code |
| QueryMultiList | Man page Source code |
| QueryMultiListMir | Man page Source code |
| QueryPpiSQLiteZero | Man page Source code |
| QueryTFSQLite | Man page Source code |
| QueryXenoMirSQLite | Man page Source code |
| ReadGraphData | Man page Source code |
| ReadTabData | Man page Source code |
| ReadTabExpressData | Man page Source code |
| RecordRCommand | Man page Source code |
| ReduceEdgeDensity | Man page Source code |
| RemoveDuplicates | Man page Source code |
| RemoveMirEntry | Man page Source code |
| RowScale | Man page Source code |
| SaveRCommands | Source code |
| SearchMultiNet | Man page Source code |
| SetCurrentDataMulti | Man page Source code |
| SetPpiDb | Man page Source code |
| SetupIndListData | Man page Source code |
| SetupItemFromList | Man page Source code |
| SetupItemFromPickList | Man page Source code |
| SetupMirExpressData | Man page Source code |
| SetupMirListData | Man page Source code |
| SetupSourceFromList | Man page Source code |
| SetupXenoMirListData | Man page Source code |
| ShowMemoryUse | Man page Source code |
| UpdateMirEntries | Man page Source code |
| UpdateNetworkLayout | Man page Source code |
| UpdateSubnetStats | Man page Source code |
| UpdateXenoMirEntries | Man page Source code |
| `%fin%` | Source code |
| all.numeric | Man page |
| checkMiRNAVersion | Man page Source code |
| convertIgraph2JSON | Man page Source code |
| convertIgraph2JSONFromFile | Man page Source code |
| convertMat2Pre | Source code |
| convertModuleToDF | Source code |
| convtMatMir | Source code |
| doAnnotation | Man page Source code |
| doEntrez2SymbolMapping | Man page Source code |
| doGeneIDMapping | Man page Source code |
| doMirGeneAnnotation | Man page Source code |
| doProbeMapping | Man page Source code |
| doSymbol2EntrezMapping | Man page Source code |
| fast.write.csv | Source code |
| generate_breaks | Man page Source code |
| getExpColors | Man page Source code |
| getGraphStatsFromFile | Source code |
| gg_color_hue | Man page Source code |
| hex2rgba | Man page Source code |
| layout_in_circles | Man page Source code |
| makeReadable | Source code |
| miRNA_PrecursorToMature | Man page Source code |
| my.mir.target.enrich | Source code |
| my.snp.mir.mapping | Source code |
| myave | Man page |
| queryGeneDB | Man page Source code |
| readSet | Source code |
| rescale2NewRange | Man page Source code |
| saveSet | Source code |
| scale_colours | Man page Source code |
| scale_vec_colours | Man page Source code |
| simpleCap | Man page Source code |
| sync2vecs | Man page Source code |
