Files in xia-lab/miRNetR

A companion R package for the miRNet web server

LICENSE.md NEWS.md R/AnotUtils.R R/DataUtils.R R/ExprUtils.R R/GraphFileUtils.R R/ListUtils.R R/MirFunUtils.R R/MirNetUtils.R R/MiscUtils.R R/XenoMirUtils.R R/utils_mir_snp.R R/utils_mir_target_enrich.R README.md man/AutoNorm.Rd man/CalculateMirTargetSet.Rd man/CalculatePairwiseDiff.Rd man/CleanMemory.Rd man/ClearFactorStrings.Rd man/ClearStrings.Rd man/ComputeColorGradient.Rd man/ComputePCSFNet.Rd man/ComputeSubnetStats.Rd man/CreateMirNets.Rd man/DecomposeMirGraph.Rd man/ExcludeNodes.Rd man/ExtractMirNetModule.Rd man/FilterMirNet.Rd man/FilterMirNetByList.Rd man/FindCommunities.Rd man/GetAnotNames.Rd man/GetBashFullPath.Rd man/GetClassInfo.Rd man/GetColorGradient.Rd man/GetColorSchema.Rd man/GetExtendRange.Rd man/GetFC.Rd man/GetMinConnectedGraphs.Rd man/GetMirResCol.Rd man/GetMirResRowNames.Rd man/GetNetNames.Rd man/GetNetNms.Rd man/GetNetStatByType.Rd man/GetNetStatColNames.Rd man/GetNetStatMatrix.Rd man/GetNetStats.Rd man/GetNetsNameString.Rd man/GetNetworkTopology.Rd man/GetQueryNum.Rd man/GetRCommandHistory.Rd man/GetRandomMirTargetGenes.Rd man/GetRandomXenoMirTargetGenes.Rd man/GetSeedsColumn.Rd man/GetSeq.Rd man/GetSeqnm.Rd man/GetShortestPaths.Rd man/GetSigGenes.Rd man/GetTableNames.Rd man/GetTtestP.Rd man/GetTypeNum.Rd man/GetUniqueClassNames.Rd man/GetUniqueDiseaseNames.Rd man/GetUniqueEntries.Rd man/GetUniqueEpigeneNames.Rd man/GetUniqueMoleculeNames.Rd man/GetUniqueSourceNames.Rd man/GetUniqueSpeciesNames.Rd man/GetUnmappedNum.Rd man/GetUpdateClassNames.Rd man/GetUpdateSpeNames.Rd man/Init.Data.Rd man/LoadClusterLib.Rd man/LoadDiseaseLib.Rd man/LoadFuncLib.Rd man/LoadGOLib.Rd man/LoadHMDDLib.Rd man/LoadKEGGLib.Rd man/LoadREACTOMELib.Rd man/LoadTFLib.Rd man/LoadTissueLib.Rd man/LoadmiRFamLib.Rd man/LogNorm.Rd man/PerformAPIMirTargetEnrichAnalysis.Rd man/PerformArrayDataNormalization.Rd man/PerformCircRNAMapping.Rd man/PerformCountDataNormalization.Rd man/PerformDataAnnot.Rd man/PerformDisMapping.Rd man/PerformEdgeR.Rd man/PerformGeneAnnotation.Rd man/PerformHTqPCR.Rd man/PerformLayOut.Rd man/PerformLimma.Rd man/PerformLncRNAMapping.Rd man/PerformMir2EpiMapping.Rd man/PerformMirGeneMapping.Rd man/PerformMirTargetEnrichAnalysis.Rd man/PerformMolMapping.Rd man/PerformPseudoMapping.Rd man/PerformQpcrDataNormalization.Rd man/PerformSNPMirGeneMapping.Rd man/PerformSncRNAMapping.Rd man/PerformSpeciesMapping.Rd man/PerformTFMapping.Rd man/PerformXenoMirGeneMapping.Rd man/PlotBetweennessHistogram.Rd man/PlotDataOverview.Rd man/PlotDegreeHistogram.Rd man/PrepareCSV.Rd man/PrepareGraphML.Rd man/PrepareJsonFromR.Rd man/PrepareMirNet.Rd man/Query.miRNetDB.Rd man/QueryMultiList.Rd man/QueryMultiListMir.Rd man/QueryPpiSQLiteZero.Rd man/QueryTFSQLite.Rd man/QueryXenoMirSQLite.Rd man/ReadGraphData.Rd man/ReadTabData.Rd man/ReadTabExpressData.Rd man/RecordRCommand.Rd man/ReduceEdgeDensity.Rd man/RemoveDuplicates.Rd man/RemoveMirEntry.Rd man/RowScale.Rd man/SearchMultiNet.Rd man/SetCurrentDataMulti.Rd man/SetPpiDb.Rd man/SetupIndListData.Rd man/SetupItemFromList.Rd man/SetupItemFromPickList.Rd man/SetupMirExpressData.Rd man/SetupMirListData.Rd man/SetupSourceFromList.Rd man/SetupXenoMirListData.Rd man/ShowMemoryUse.Rd man/UpdateMirEntries.Rd man/UpdateNetworkLayout.Rd man/UpdateSubnetStats.Rd man/UpdateXenoMirEntries.Rd man/all.numeric.Rd man/checkMiRNAVersion.Rd man/convertIgraph2JSON.Rd man/convertIgraph2JSONFromFile.Rd man/doAnnotation.Rd man/doEntrez2SymbolMapping.Rd man/doGeneIDMapping.Rd man/doMirGeneAnnotation.Rd man/doProbeMapping.Rd man/doSymbol2EntrezMapping.Rd man/generate_breaks.Rd man/getExpColors.Rd man/gg_color_hue.Rd man/hex2rgba.Rd man/layout_in_circles.Rd man/miRNA_PrecursorToMature.Rd man/myave.Rd man/queryGeneDB.Rd man/rescale2NewRange.Rd man/scale_colours.Rd man/scale_vec_colours.Rd man/simpleCap.Rd man/sync2vecs.Rd vignettes/miRNetR.Rmd