Man pages for xiangpin/MetaMicrobiome
An R package for meta-analysis and visualization of Microbiome.
| droptax | Dropping Species with Few abundance and Few Occurrences |
| get_mapply_predict_test | model predictions |
| getthresholds | Creat the thresholds vector. |
| get_train_test_data | get train and test data |
| ggforest | forest plot base ggplot2 with the result of RunPoolEffect and... |
| high_low_vector | creat a vector with high/low versus the threshold. |
| make_RF_model | model training |
| MultiHighLow | creat list of vectors with high/low versus the threshold. |
| multiRunRR | Summary measures base on epiR for multi variables |
| multiVarRRTab | collate results for summary measure of multi-variables |
| predict_test | Model Predictions |
| predict_train | models results |
| ROCplot | plot the roc curve |
| RunPoolEffect | Calcutate effect sizes via linear (Mixed-Effects) models |
| run_rr | Summary measures base on epiR |
| tidy_data | collate results for summary measure |
