Files in xieguigang/metagenomics
Metagenomics/16S data analysis
.Rbuildignore
.Rhistory
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/custom.md
.github/ISSUE_TEMPLATE/feature_request.md
.gitignore
.pkg/build.cmd
.pkg/install.sh
.vscode/settings.json
@export/index.d.ts
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
Metagenomics.Rproj
NAMESPACE
R/16s/commandline.R
R/16s/greengenes_OTUTaxonomy.R
R/16s/mothur.R
R/16s/mothur_OTU.R
R/16s/pairend.R
R/16s/workflow2.R
R/metagenomics/blast.R
R/taxonomy/ncbi.R
R/taxonomy/taxonomy.R
R/zzz.R
README.md
docs/s41587-020-0603-3.pdf
man/.onLoad.1
man/align.seqs.1
man/align_greengenes.1
man/align_silva.1
man/bin.seqs.1
man/classify.seqs.1
man/cluster.1
man/count.seqs.1
man/dist.seqs.1
man/filter.seqs.1
man/get.oturep.1
man/getBlastnMapping.1
man/greengenes_OTUTaxonomy.1
man/greengenes_opts.1
man/make.contigs.1
man/mothurArgvs.1
man/mothurErrorParser.1
man/mothur_OTU.1
man/mothur_files.1
man/mothur_workflow.1
man/pairEnds.1
man/runMothur.1
man/screen.seqs.1
man/split.groups.1
man/summary.seqs.1
man/summary.tax.1
man/taxonomy_annotation.1
man/unique.seqs.1
man/workflow2.1
man/write_contig.1
test/16s_results.summary
test/mothur_OTU_table.csv
test/mothur_tax_summary.R
test/ncbi/reader_test.R
vignettes/R/docs/.onLoad.html
vignettes/R/docs/align.seqs.html
vignettes/R/docs/align_greengenes.html
vignettes/R/docs/align_silva.html
vignettes/R/docs/bin.seqs.html
vignettes/R/docs/classify.seqs.html
vignettes/R/docs/cluster.html
vignettes/R/docs/count.seqs.html
vignettes/R/docs/dist.seqs.html
vignettes/R/docs/filter.seqs.html
vignettes/R/docs/get.oturep.html
vignettes/R/docs/getBlastnMapping.html
vignettes/R/docs/greengenes_OTUTaxonomy.html
vignettes/R/docs/greengenes_opts.html
vignettes/R/docs/make.contigs.html
vignettes/R/docs/mothurArgvs.html
vignettes/R/docs/mothurErrorParser.html
vignettes/R/docs/mothur_OTU.html
vignettes/R/docs/mothur_files.html
vignettes/R/docs/mothur_workflow.html
vignettes/R/docs/pairEnds.html
vignettes/R/docs/runMothur.html
vignettes/R/docs/screen.seqs.html
vignettes/R/docs/split.groups.html
vignettes/R/docs/summary.seqs.html
vignettes/R/docs/summary.tax.html
vignettes/R/docs/taxonomy_annotation.html
vignettes/R/docs/unique.seqs.html
vignettes/R/docs/workflow2.html
vignettes/R/docs/write_contig.html
vignettes/index.html
workflow/16s.R
workflow/PICRUSt.R
workflow/batchfile.mothur
workflow/mothur_batch2.R
workflow/mothur_contig_OTU.pl
