Files in xinghuq/DeepGenomeScan
DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)
.gitignore
DESCRIPTION
DeepGenomeScan.Rproj
License
NAMESPACE
R/CNN_varIMP_permute.R
R/DL_qvalues.R
R/DeepGenomeScan.R
R/MLP_varIMP_NULL_model.R
R/MLP_varIMP_permute.R
R/varImp.R
README.md
_pkgdown.yml
docs/404.html
docs/DeepGenomeScan_model_list.rmd
docs/LICENSE-text.html
docs/articles/Activation_functions.html
docs/articles/Activation_functions_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/Activation_functions_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/Activation_functions_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/Activation_functions_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/Activation_functions_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/Activation_functions_files/datatables-binding-0.8/datatables.js
docs/articles/Activation_functions_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/Activation_functions_files/dt-core-bootstrap-1.10.16/css/dataTables.bootstrap.extra.css
docs/articles/Activation_functions_files/dt-core-bootstrap-1.10.16/css/dataTables.bootstrap.min.css
docs/articles/Activation_functions_files/dt-core-bootstrap-1.10.16/js/dataTables.bootstrap.min.js
docs/articles/Activation_functions_files/dt-core-bootstrap-1.10.16/js/jquery.dataTables.min.js
docs/articles/Activation_functions_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/Activation_functions_files/jquery-1.12.4/LICENSE.txt
docs/articles/Activation_functions_files/jquery-1.12.4/jquery.min.js
docs/articles/Deep Learning Architecture Construction.html
docs/articles/DeepGenomeScan_model_list.html
docs/articles/DeepGenomeScan_model_list_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/DeepGenomeScan_model_list_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/DeepGenomeScan_model_list_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/DeepGenomeScan_model_list_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/DeepGenomeScan_model_list_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/DeepGenomeScan_model_list_files/datatables-binding-0.8/datatables.js
docs/articles/DeepGenomeScan_model_list_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/DeepGenomeScan_model_list_files/dt-core-bootstrap-1.10.16/css/dataTables.bootstrap.extra.css
docs/articles/DeepGenomeScan_model_list_files/dt-core-bootstrap-1.10.16/css/dataTables.bootstrap.min.css
docs/articles/DeepGenomeScan_model_list_files/dt-core-bootstrap-1.10.16/js/dataTables.bootstrap.min.js
docs/articles/DeepGenomeScan_model_list_files/dt-core-bootstrap-1.10.16/js/jquery.dataTables.min.js
docs/articles/DeepGenomeScan_model_list_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/DeepGenomeScan_model_list_files/jquery-1.12.4/LICENSE.txt
docs/articles/DeepGenomeScan_model_list_files/jquery-1.12.4/jquery.min.js
docs/articles/home.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Activation_info.html
docs/reference/CNN_varIMP_NULL_model.html
docs/reference/CNN_varIMP_permute.html
docs/reference/DLqvalues.html
docs/reference/DeepGenomeScan.html
docs/reference/MLP_varIMP_NULL_model.html
docs/reference/MLP_varIMP_permute.html
docs/reference/Rplot001.png
docs/reference/index.html
docs/reference/model_info.html
docs/reference/sim_example.html
docs/reference/varImp.html
docs/sitemap.xml
inst/CITATION
inst/extdata/Available_activation_function2.csv
inst/extdata/GenomeScan_Model_list.csv
inst/extdata/sim1.csv
man/Activation_info.Rd
man/CNN_varIMP_NULL_model.Rd
man/CNN_varIMP_permute.Rd
man/DLqvalues.Rd
man/DeepGenomeScan.Rd
man/GarsonWeights.Rd
man/GarsonWeights_FCNN4R.Rd
man/MLP_varIMP_NULL_model.Rd
man/MLP_varIMP_permute.Rd
man/model_info.Rd
man/sim_example.Rd
man/varImp.Rd
models/CNNsgd.R
models/mlpFCNN4Rsgd.R
models/mlph2o.R
models/mlpneuralnet.R
models/mlpneuralnet1.R
models/modelRSNNSmlpdecay.R
models/modelmlpkerasdropout.R
models/readme.md
