Man pages for xinghuq/DeepGenomeScan
DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)
| Activation_info | Activation function list |
| CNN_varIMP_NULL_model | CNN variable importance using NULL model |
| CNN_varIMP_permute | CNN variable importance using permutation |
| DeepGenomeScan | Implementation of deep learning based genome scan |
| DLqvalues | Calculating q-values from importance values |
| GarsonWeights | Estimating Garson weights from neural networks |
| GarsonWeights_FCNN4R | Estimating Garson weights from FCNN4R models |
| MLP_varIMP_NULL_model | MLP variable importance using NULL model |
| MLP_varIMP_permute | MLP variable importance using permutation |
| model_info | Available models in DeepGenomeScan |
| sim_example | Simulated data example with 10 environmental factors. |
| varImp | Variable importance for DeepGenomeScan models |
