Man pages for xu-lab/SLICE
Determining Cell Differentiation and Lineage based on Single Cell Entropy
| construct | construct a slice object from an expression matrix |
| construct_from_seurat | construct a slice object from a Seurat object |
| getDiffGenes | Detecting lineage dependent differentially expressed genes |
| getEntropy | calculate scEntropies of individual cells |
| getLineageModel | Infer entropy-directed cell lineage model |
| getPatterns | Discover lineage dependent temporal patterns |
| getProfiles | Exract lineage dependent gene expression profiles |
| getRDS | reduce expression space |
| getTrajectories | Reconstructing cell trajectories following a specific lineage... |
| plotEntropies | Visualize and compare entropies |
| slice | The slice Class |
