Man pages for xuzhougeng/bsaR
BSA analysis R packages
| bsaR-class | bsaR class |
| CalcAltFreq | calculate the allele frequency of ref |
| CalcDepth | calculate the depth of each sample |
| CalcFreqByWindow | caculate the frequency by windows |
| CallGenotype | call geneotyep by allele frequency |
| CreateBsaFromVcf | Create bsa object from vcf |
| FilterByAF | filter allele matrix by low AF |
| FilterByDepth | filter allele matrix by depth |
| FilterByGeno | filter loci by geno type |
| FilterByPos | filter allele matrix by Position |
| FilterMultiVariant | filter multi-variant loci |
| FilterNaVariant | filter NA Variant |
| plotWindowFreq | plot window frequency |
| SubsetGenome | subset genome |
