equalMedianNormalization | normalize to have equal medians in all samples |
farmsSummary | summarize peptide/PSM intensity into protein level relative... |
medianSummary | summarize peptide/PSM intensity into protein level relative... |
medianSweeping | summarize peptide/PSM intensity into protein level relative... |
medpolishSummary | summarize peptide/PSM intensity into protein level relative... |
outputResult | output the DEqMS analysis results in a data frame |
peptideProfilePlot | plot log2 intensities of all peptides for one gene in... |
Residualplot | plot the residuals against the number of quantified... |
spectraCounteBayes | Peptide/Spectra Count Based Empirical Bayes Statistics for... |
VarianceBoxplot | generate a boxplot of the variance |
VarianceScatterplot | generate a scatter plot of the variance |
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