Files in yasin-uzun/SINBAD
A Single Cell DNA Methylation Data Processing Pipeline
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Main.R
R/Shiny_GUI.R
R/alignment.R
R/class_def.R
R/clustering.R
R/dimensionality_reduction.R
R/dmr_analysis.R
R/generate_report.Rmd
R/imputation.R
R/methylation_calling.R
R/preprocessing.R
R/regional_quantification.R
R/replace.sh
R/scATAC-pro_report.Rmd
R/utils.R
R/variables.env
README.Rmd
README.md
config_files/config_files.hg38_plus_lambda.paired/config.general.R
config_files/config_files.hg38_plus_lambda.paired/config.genome.R
config_files/config_files.hg38_plus_lambda.paired/config.project.R
config_files/config_files.hg38_plus_lambda.single_ended/config.general.R
config_files/config_files.hg38_plus_lambda.single_ended/config.genome.R
config_files/config_files.hg38_plus_lambda.single_ended/config.project.R
docs/SINBAD_Framework.png
docs/SINBAD_User_Manual.pdf
docs/SINBAD_alignment.png
docs/test_script.R
inst/extdata/demultiplex_fastq.pl
inst/extdata/get_r2_indeces_from_r1.pl
perl/demultiplex_fastq.pl
perl/get_r2_indeces_from_r1.pl
