API for yezhengSTAT/permseq_0.3.0
Mapping protein-DNA interactions in highly repetitive regions of the genomes with prior-enhanced read mapping
| Global functions | |
|---|---|
| .aggregate_data | Source code |
| .chipMeanCounts | Source code |
| .chipMeanCounts_multi | Source code |
| .clusterPositions | Source code |
| .clusterPositions_3cluster | Source code |
| .clusterPositions_histoneonly | Source code |
| .constructBins | Source code |
| .constructNeucleotideLevelCounts | Source code |
| .dnaseProcess | Source code |
| .fast.read.table | Source code |
| .fitPlot | Source code |
| .fitRlm | Source code |
| .grplasso_difflambda | Source code |
| .histoneProcess | Source code |
| .multihistoneProcess | Source code |
| .quantileFunction | Source code |
| .refineParameters | Source code |
| .run_grplasso | Source code |
| .summary | Source code |
| [,Prior-method | Man page |
| [<-,Prior-method | Man page |
| [[,Prior-method | Man page |
| [[<-,Prior-method | Man page |
| names,Prior-method | Man page |
| permseq | Man page |
| plot,Prior-method | Man page |
| print,Prior-method | Man page |
| priorClass | Man page |
| priorGenerate | Man page Source code |
| priorHistone_init | Man page Source code |
| priorHistone_multi | Man page Source code |
| priorProcess | Man page Source code |
| readAllocate | Man page Source code |
| show,Prior-method | Man page |
| summary,Prior-method | Man page |
