Man pages for ytakemon/GINIR
Genetic inteRaction and EssenTiality neTwork mApper
| annotate_df | Combine and annotate co-essential or co-expression dataframe |
| Append_perm_pval | Appends permutation adjusted p-value |
| coessential_map | Perform co-essentially mapping |
| common_coefs_coess | Perform Pearson coefficient mapping of all pairs of genes in... |
| common_coefs_prot | Perform Pearson coefficient mapping of all pairs of genes in... |
| common_coefs_rna | Perform Pearson coefficient mapping of all pairs of genes in... |
| download_example_data | Download minimal example data |
| extract_prot | Extract protein expression data for given cell lines |
| extract_rna | Extract RNA expression data for given cell lines |
| get_GeneNameID | Get unique DepMap-compatible gene IDs |
| get_inflection_points | Calculate inflection points of co-essential data frame |
| GI_screen | Perform genetic interaction screen |
| GI_screen_perms | Perform permutation test n genetic interaction screen |
| list_cancer_types | List cancer types that are available |
| list_mutations | Search mutations detected in DepMap cancer cell lines |
| pipe | Pipe operator |
| plot_coess | Plot coessential genes |
| plot_screen | Plot genetic screen results |
| protein_coexpress | Perform protein co-expression analysis |
| Pval_perm_adjust | Perform permutation test n genetic interaction screen |
| rna_coexpress | Perform RNA co-expression analysis |
| select_cell_lines | Select mutant groups based on input gene of interest |
