Files in yuabrahamliu/proRate
proRate is an R package to infer gene transcription rates with a novel least sum of squares method.

.gitignore
DESCRIPTION
NAMESPACE
R/inference_V2_new.R R/metagene_V2.R R/pausing.R R/statistics.R R/structure.R R/supps.R README.md
data/hg38.packagegenes.rda
data/lastexons.hg38.rda
data/lastexons.mm10.rda
data/mm10.packagegenes.rda
inst/extdata/ko0.bam
inst/extdata/ko15.bam
inst/extdata/wt0.bam
inst/extdata/wt15.bam
inst/python/hmm_r.py
man/addtrack.Rd man/calpauseidx.Rd man/calrate.Rd man/getexon.Rd man/getgc.Rd man/getkmer.Rd man/intercompare.Rd man/intracompare.Rd man/makegenelist.Rd man/mcalpauseidx.Rd man/mcalrate.Rd man/metaplot.Rd man/mmetaplot.Rd man/orgintercompareinput.Rd man/plotprocessing.Rd vignettes/tutorial_proRate.Rmd
vignettes/tutorial_proRate.docx
vignettes/tutorialfig1.png
vignettes/tutorialfig2.png
vignettes/tutorialfig3.png
vignettes/tutorialfig4.png
vignettes/tutorialfig5.png
vignettes/tutorialfig6.png
vignettes/tutorialfig7.png
vignettes/tutorialfig8.png
vignettes/tutorialfig9.png
yuabrahamliu/proRate documentation built on Nov. 3, 2024, 10:14 a.m.