Man pages for zeehio/MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
| cwt | Continuous Wavelet Transform (CWT) |
| exampleMS | An example mass spectrum |
| extendLength | Extend the length of a signal or matrix |
| extendNBase | Extend the row number of a matrix as the exponential of base... |
| findLocalMaxWinSize | Find local maxima and return the size of the window where... |
| getLocalMaximumCWT | Identify the local maximum of each column in 2-D CWT... |
| getRidge | Identify ridges based on the local maximum matrix |
| getRidgeLength | Estimate the length of the ridge |
| getRidgeValue | Get the CWT coefficient values corresponding to the peak... |
| identifyMajorPeaks | Identify peaks based on the ridges in 2-D CWT coefficient... |
| localMaximum | Identify local maximum within a slide window. |
| MassSpecWavelet-package | Peak detection of mass spectrum by Wavelet transform based... |
| mexh | The mexican hat function |
| mzInd2vRange | Match m/z index to m/z value with a certain error range |
| mzV2indRange | Match m/z value to m/z index with a certain error range |
| peakDetectionCWT | The main function of peak detection by CWT based pattern... |
| plotLocalMax | Plot the local maximum matrix |
| plotPeak | Plot the identified peaks over the spectrum |
| plotRidgeList | Plot the ridge list |
| prepareWavelets | Prepare daughter wavelets for faster CWT |
| smoothDWT | smooth (denoise) the spectrum by DWT (Discrete Wavelet... |
| tuneInPeakInfo | Tune in the peak information: peak position and peak scale |
