Man pages for zff-excellent/scImmuneGraph
A toolkit to count and visualize the basic properties of the single-cell immune repertoire
| BasicPlot | Draw a variety of diagrams |
| bcontig_list | Single chain immune repertoire dataset |
| BCR.CDR3ntLengthDistribution | CDR3 nucleic acid length distribution in the sample |
| BCR.ClonalStateDistribution | Distribution of clonal status of single-cell BCR clonotypes |
| BCR.ClonotypeComposition | The composition of single-cell BCR clonotypes in the sample |
| BCR.ContigList | Converting 10X genomics produced B cell contigs file(s) as a... |
| BCR.JgeneAbundance | J gene abundance distribution in the sample |
| BCR.top100CDR3Abundance | #' Get the 100 most abundant CDR3 |
| BCR.top100ClonotypeAbundance | Get the 100 most abundant clonotypes |
| BCR.VgeneAbundance | V gene abundance distribution in the sample |
| BCR.VJgenePair | VJ gene pair abundance distribution in the sample |
| tcontig_list | Single chain immune repertoire dataset |
| TCR.CDR3ntLengthDistribution | CDR3 nucleic acid length distribution in the sample |
| TCR.ClonalStateDistribution | Distribution of clonal status of single-cell TCR clonotypes |
| TCR.ClonotypeComposition | The composition of single-cell TCR clonotypes in the sample |
| TCR.ContigList | Converting 10X genomics produced T cell contigs file(s) as a... |
| TCR.JgeneAbundance | J gene abundance distribution in the sample |
| TCR.top100CDR3Abundance | #' Get the 100 most abundant CDR3 |
| TCR.top100ClonotypeAbundance | Get the 100 most abundant clonotypes |
| TCR.VgeneAbundance | V gene abundance distribution in the sample |
| TCR.VJgenePair | VJ gene pair abundance distribution in the sample |
