API for zgyaru/PASBench
benchmarking study of seven (PAS) tools for scRNA-seq analysis
| Global functions | |
|---|---|
| PAS_vis | Man page Source code |
| cal_AUCell | Source code |
| cal_ROMA | Source code |
| cal_all_tools | Man page Source code |
| cal_fscLVM | Man page Source code |
| cal_gsva | Source code |
| cal_pagoda2 | Source code |
| cal_plage | Source code |
| cal_ssgsea | Source code |
| cal_vision | Source code |
| cal_zscore | Source code |
| calculate_PAS | Man page Source code |
| cluster_GMM | Source code |
| cluster_metrics | Source code |
| clustering_kmeans | Source code |
| clustering_louvain | Source code |
| data_ARI | Source code |
| del_geneSets_roma | Source code |
| del_geneSets_vision | Source code |
| dimension_reduc_metric | Source code |
| dropGsets | Source code |
| dropoutGenes_v1 | Source code |
| dropoutGenes_v2 | Source code |
| dropoutSets | Source code |
| getAllGenes | Source code |
| getCounts | Source code |
| getGMT | Source code |
| getVarib | Source code Source code |
| len_gSets | Source code |
| load_counts | Man page Source code |
| load_visOJ | Man page Source code |
| normToOne | Source code |
| parseRuns | Source code |
| prepare_vis | Man page Source code |
| runs_name | Source code |
| shufflGsets | Source code |
| shuffleSets | Source code |
| toGMT | Source code |
