Files in zgyaru/PASBench
benchmarking study of seven (PAS) tools for scRNA-seq analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
PASBench.Rproj
R/example.R
R/main.R
R/metrics.R
R/scalability.R
R/stability.R
R/tools.R
R/utils.R
README.md
data/counts.rda
data/vis_oj.rda
inst/gmtFiles/human/CGN.gmt
inst/gmtFiles/human/CGP.gmt
inst/gmtFiles/human/CM.gmt
inst/gmtFiles/human/GO.bp.gmt
inst/gmtFiles/human/GO.cc.gmt
inst/gmtFiles/human/Go.mf.gmt
inst/gmtFiles/human/Immu.gmt
inst/gmtFiles/human/OncoG.gmt
inst/gmtFiles/human/TFT.gmt
inst/gmtFiles/human/biocarta.gmt
inst/gmtFiles/human/hallmarker.gmt
inst/gmtFiles/human/kegg.gmt
inst/gmtFiles/human/panther.gmt
inst/gmtFiles/human/reactome.gmt
inst/gmtFiles/mouse/GO.bp.gmt
inst/gmtFiles/mouse/GO.cc.gmt
inst/gmtFiles/mouse/GO.mf.gmt
inst/gmtFiles/mouse/HPO.gmt
inst/gmtFiles/mouse/MPO.gmt
inst/gmtFiles/mouse/STITCH.gmt
inst/gmtFiles/mouse/TFT.gmt
inst/gmtFiles/mouse/drug.gmt
inst/gmtFiles/mouse/kegg.gmt
inst/gmtFiles/mouse/mousecyc.gmt
inst/gmtFiles/mouse/panther.gmt
inst/gmtFiles/mouse/pathbank.gmt
inst/gmtFiles/mouse/reactome.gmt
inst/gmtFiles/mouse/toxic.gmt
inst/shiny/app.R
man/PAS_vis.Rd
man/cal_all_tools.Rd
man/cal_fscLVM.Rd
man/calculate_PAS.Rd
man/load_counts.Rd
man/load_visOJ.Rd
man/prepare_vis.Rd
pic/clustering.png
pic/differential.png
pic/trajectory.png
pic/workflow.jpg
src/accuracy_ca.py
