Files in zhezhangsh/PAClindrome
Palindrome subsequences in PacBio long reads
DESCRIPTION
NAMESPACE
PAClindrome.Rproj
R/AssembleFullread.R
R/ConsensusFromMuscleAlignment.R
R/MakeConsensusFromPalindromeMSA.R
R/PalindromeFromSeedAlignment.R
R/ParseAlignment.R
R/SegmentationFromSelfAlignment.R
R/SelectionFromSegmentAlignment.R
R/SplitRevserseAlignment.R
R/SplitSubread.R
R/SummarizeConsensus.R
R/TrimNs.R
README.md
doc/summary.md
example/output/consensus-sequence.fasta
example/output/consensus-summary.rds
example/output/consensus-summary.txt
example/output/fullread.list
example/output/fullread.rds
example/output/m54215_191216_174243/4260227.zip
example/output/m54215_191216_174243/4325960.zip
example/output/m54215_191216_174243/4522859.zip
example/output/m54215_200221_110350/4784809.zip
example/output/m54215_200221_110350/4980913.zip
example/output/m54215_200221_110350/4981702.zip
example/output/smrt.list
example/output/subread.list
example/subread-ex.fasta
man/hello.Rd
script/config.txt
script/generate-consensus.sh
script/r/extractpalin.r
script/r/makeconsensus.r
script/r/parsealign.r
script/r/segmentself.r
script/r/selectseed.r
script/r/subread2fullread.r
script/run_paclindrome
script/split-read.r
script/step1.sh
script/step2.sh
script/step3.sh
script/summarize-consensus.r
