Files in zhouLabNCSU/C3NA
Correlation and Consensus-Based Cross-Taxonomy Network Analysis (C3NA)
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.gitignore
C3NA.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/data.r
R/global.r
R/influentialTaxa.r
R/miscFunctions.r
R/moduleRelated.r
R/shinyMethods.R
R/updatedWGCNAPreservationFuncs.R
README.md
_pkgdown.yml
data/CRC_Phyloseq.rdata
docs/404.html
docs/LICENSE-text.html
docs/articles/C3NA.html
docs/articles/index.html
docs/articles/rMD1_Demo.html
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/rMD1_Demo_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/rMD1_Demo_files/datatables-binding-0.20/datatables.js
docs/articles/rMD1_Demo_files/datatables-binding-0.25/datatables.js
docs/articles/rMD1_Demo_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/rMD1_Demo_files/dt-core-1.11.3/css/jquery.dataTables.extra.css
docs/articles/rMD1_Demo_files/dt-core-1.11.3/css/jquery.dataTables.min.css
docs/articles/rMD1_Demo_files/dt-core-1.11.3/js/jquery.dataTables.min.js
docs/articles/rMD1_Demo_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/rMD2_DA.html
docs/articles/rMD2_DA_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/rMD2_DA_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/rMD2_DA_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/rMD2_DA_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/rMD2_DA_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/rMD2_DA_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/rMD2_DA_files/datatables-binding-0.20/datatables.js
docs/articles/rMD2_DA_files/datatables-binding-0.25/datatables.js
docs/articles/rMD2_DA_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/rMD2_DA_files/dt-core-1.11.3/css/jquery.dataTables.extra.css
docs/articles/rMD2_DA_files/dt-core-1.11.3/css/jquery.dataTables.min.css
docs/articles/rMD2_DA_files/dt-core-1.11.3/js/jquery.dataTables.min.js
docs/articles/rMD2_DA_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/rMD3_FAQ.html
docs/articles/rMD4_ModEvals.html
docs/articles/rMD5_ComparePhenotypes.html
docs/articles/rMD6_C3NAObjectDescription.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/C3NA-package.html
docs/reference/C3NAPackageCheck.html
docs/reference/CRC_Phyloseq.html
docs/reference/Rplot001.png
docs/reference/addDAResults.html
docs/reference/comparePhenotypes.html
docs/reference/compareTwoPhenoShiny.html
docs/reference/extractResults.html
docs/reference/figures/C3NAPipeline.png
docs/reference/figures/ClickDemo.gif
docs/reference/figures/NetworkLegend.png
docs/reference/figures/RObjectDetails.png
docs/reference/figures/RPackageLogo.png
docs/reference/figures/Shiny1PanelGuide.jpg
docs/reference/figures/Shiny2PanelGuide.jpg
docs/reference/figures/modEval_Selectors.gif
docs/reference/figures/modEval_SilCon2.gif
docs/reference/figures/modEval_download.png
docs/reference/figures/modEval_patterns.png
docs/reference/figures/twoPheno_Section1.gif
docs/reference/figures/twoPheno_Section2.gif
docs/reference/figures/twoPheno_Section3Par1.gif
docs/reference/figures/twoPheno_Section3Par2.gif
docs/reference/figures/twoPheno_download.png
docs/reference/getInfluentialTaxa.html
docs/reference/getOptMods.html
docs/reference/getStackedTaxaMatrix.html
docs/reference/index.html
docs/reference/initiateC3NA.html
docs/reference/initiateC3NA_DiffCorr.html
docs/reference/moduleEvals.html
docs/reference/updateInitiateC3NA.html
docs/reference/validatePhloseq.html
docs/search.json
docs/sitemap.xml
man/C3NAPackageCheck.Rd
man/CRC_Phyloseq.Rd
man/addDAResults.Rd
man/comparePhenotypes.Rd
man/compareTwoPhenoShiny.Rd
man/extractResults.Rd
man/figures/C3NAPipeline.png
man/figures/ClickDemo.gif
man/figures/NetworkLegend.png
man/figures/RObjectDetails.png
man/figures/RPackageLogo.png
man/figures/Shiny1PanelGuide.jpg
man/figures/Shiny2PanelGuide.jpg
man/figures/modEval_Selectors.gif
man/figures/modEval_SilCon2.gif
man/figures/modEval_download.png
man/figures/modEval_patterns.png
man/figures/twoPheno_Section1.gif
man/figures/twoPheno_Section2.gif
man/figures/twoPheno_Section3Par1.gif
man/figures/twoPheno_Section3Par2.gif
man/figures/twoPheno_download.png
man/getInfluentialTaxa.Rd
man/getOptMods.Rd
man/getStackedTaxaMatrix.Rd
man/initiateC3NA.Rd
man/initiateC3NA_DiffCorr.Rd
man/moduleEvals.Rd
man/validatePhloseq.Rd
vignettes/C3NA.Rmd
vignettes/rMD1_Demo.Rmd
vignettes/rMD2_DA.Rmd
vignettes/rMD3_FAQ.Rmd
vignettes/rMD4_ModEvals.Rmd
vignettes/rMD5_ComparePhenotypes.Rmd
vignettes/rMD6_C3NAObjectDescription.Rmd
www/NetworkLegend.png
www/figures/C3NAPipeline.png
www/figures/RPackageLogo.jpg
