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.Rproj.user/A6F1E47C/pcs/files-pane.pper
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.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/crosslink.R
R/layout.R
R/transfromation.R
R/utils.R
README.md
crosslink.Rproj
data/demo.RData
data/edges.rda
data/eg_edges.rda
data/eg_nodes.rda
data/example.rda
data/geneData.rda
data/methData.rda
data/mirData.rda
data/nodes.rda
docs/404.html
docs/LICENSE-text.html
docs/README_changetmp.html
docs/articles/index.html
docs/articles/vignette.html
docs/articles/vignette_files/figure-html/unnamed-chunk-10-1.png
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docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CrossLink-class.html
docs/reference/Predefined_layouts.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/circle_projector.html
docs/reference/cl_active.html
docs/reference/cl_align.html
docs/reference/cl_annotation.html
docs/reference/cl_coord.html
docs/reference/cl_copy.html
docs/reference/cl_layouts.html
docs/reference/cl_plot.html
docs/reference/cl_rel2abs.html
docs/reference/cl_void.html
docs/reference/cl_xrange.html
docs/reference/coerce_x_len.html
docs/reference/crosslink.html
docs/reference/degree_to_radian.html
docs/reference/gen_demo.html
docs/reference/get_cross.html
docs/reference/get_header.html
docs/reference/get_link.html
docs/reference/index.html
docs/reference/index_to_name.html
docs/reference/interval_inclusion.html
docs/reference/layout_column.html
docs/reference/list_along.html
docs/reference/merge_list.html
docs/reference/nullna_default.html
docs/reference/override_aes.html
docs/reference/period_arcTrig.html
docs/reference/period_variable.html
docs/reference/radian_to_degree.html
docs/reference/segment_range.html
docs/reference/set_header.html
docs/reference/set_space.html
docs/reference/show-CrossLink-method.html
docs/reference/show_aes.html
docs/reference/string_to_circle.html
docs/reference/tf_affine.html
docs/reference/tf_fun.html
docs/reference/todataframe_by_list.html
docs/reference/tolist_by_group.html
docs/reference/transform_by_fun-1.png
docs/reference/transform_by_fun-2.png
docs/reference/transform_by_fun.html
docs/reference/transform_by_matrix-1.png
docs/reference/transform_by_matrix.html
docs/reference/transform_matrix.html
docs/reference/transform_matrix_affine.html
docs/reference/vector_to_coord.html
man/CrossLink-class.Rd
man/circle_projector.Rd
man/cl_active.Rd
man/cl_align.Rd
man/cl_annotation.Rd
man/cl_coord.Rd
man/cl_copy.Rd
man/cl_layouts.Rd
man/cl_plot.Rd
man/cl_plot2.Rd
man/cl_rel2abs.Rd
man/cl_void.Rd
man/cl_xrange.Rd
man/coerce_x_len.Rd
man/crosslink.Rd
man/degree_to_radian.Rd
man/gen_demo.Rd
man/get_cross.Rd
man/get_header.Rd
man/get_link.Rd
man/index_to_name.Rd
man/interval_inclusion.Rd
man/layout_column.Rd
man/list_along.Rd
man/merge_list.Rd
man/nullna_default.Rd
man/override_aes.Rd
man/period_arcTrig.Rd
man/period_variable.Rd
man/radian_to_degree.Rd
man/segment_range.Rd
man/set_header.Rd
man/set_space.Rd
man/show-CrossLink-method.Rd
man/show_aes.Rd
man/string_to_circle.Rd
man/tf_affine.Rd
man/tf_fun.Rd
man/todataframe_by_list.Rd
man/tolist_by_group.Rd
man/transform_by_fun.Rd
man/transform_by_matrix.Rd
man/transform_matrix.Rd
man/transform_matrix_affine.Rd
man/vector_to_coord.Rd
vignettes/.gitignore
vignettes/vignette.Rmd
vignettes/vignette.html