addProcedures: Add Diagnostic Measurements and Procedure Occurrences to a...

In CohortUtilisation: Healthcare Resource Utilization on OMOP CDM Cohorts

Add Diagnostic Measurements and Procedure Occurrences to a Cohort

Description

Add Diagnostic Measurements and Procedure Occurrences to a Cohort

Usage

addProcedures(
  x,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(-365, -1), c(0, 365)),
  labConceptSet = NULL,
  imagingConceptSet = NULL,
  procedureConceptSet = NULL,
  nameStyle = "{metric}_count_{window_name}",
  name = NULL
)

Arguments

x	A cohort table or cdm_table.
indexDate	Date variable in x anchoring the observation window. Default: "cohort_start_date".
censorDate	Optional date variable in x to censor observation.
window	A named or unnamed list of 2-element numeric vectors. Default: list(c(-365, -1), c(0, 365)).
labConceptSet	Optional concept set / codelist for laboratory tests in measurement.
imagingConceptSet	Optional concept set / codelist for imaging scans in procedure_occurrence.
procedureConceptSet	Optional concept set / codelist for procedures in procedure_occurrence.
nameStyle	Column naming pattern. Default: "{metric}_count_{window_name}".
name	Name of the new table in the write schema. If NULL, a temporary table is returned.

Value

The cohort table x with added procedure and diagnostic metric columns.

CohortUtilisation documentation built on Aug. 30, 2026, 9:07 a.m.