Man pages for SelfControlledCaseSeries
Self-Controlled Case Series
| checkEventExposureIndependenceAssumption | Check diagnostic for event-dependent exposure |
| checkEventObservationIndependenceAssumption | Check diagnostic for event-dependent observation end |
| checkRareOutcomeAssumption | Check if rare outcome assumption is violated |
| checkTimeStabilityAssumption | Check stability of outcome rate over time |
| computeMdrr | Compute the minimum detectable relative risk |
| computePreExposureGainP | Compute P for pre-exposure risk gain |
| computeTimeStability | Check stability of outcome rate over time |
| convertJsonToSccsAnalysesSpecifications | Convert JSON to SccsAnalysesSpecifications |
| convertSccsAnalysesSpecificationsToJson | Convert SccsAnalysesSpecifications to JSON |
| convertUntypedListToSccsAnalysesSpecifications | Convert untyped list to SccsAnalysesSpecifications |
| createAgeCovariateSettings | Create age covariate sesettings#' Create age covariate... |
| createCalendarTimeCovariateSettings | Create calendar time settings |
| createControlIntervalSettings | Create control interval settings |
| createCreateSccsIntervalDataArgs | Create a parameter object for the 'createSccsIntervalData()'... |
| createCreateScriIntervalDataArgs | Create a parameter object for the 'createScriIntervalData()'... |
| createCreateStudyPopulationArgs | Create a parameter object for the 'createStudyPopulation()'... |
| createDefaultSccsMultiThreadingSettings | Create default SelfControlledCaseSeries multi-threading... |
| createEraCovariateSettings | Create era covariate settings |
| createExposure | Create exposure definition |
| createExposuresOutcome | Create a exposures-outcome combination. |
| createFitSccsModelArgs | Create a parameter object for the function fitSccsModel |
| createGetDbSccsDataArgs | Create a parameter object for the function getDbSccsData |
| createResultsDataModel | Create the results data model tables on a database server. |
| createSccsAnalysesSpecifications | Create full SCCS analysis specifications |
| createSccsAnalysis | Create a SelfControlledCaseSeries analysis specification |
| createSccsDiagnosticThresholds | Create SCCS diagnostics thresholds |
| createSccsIntervalData | Create SCCS era data |
| createSccsMultiThreadingSettings | Create SelfControlledCaseSeries multi-threading settings |
| createSccsSimulationSettings | Create SCCS simulation settings |
| createScriIntervalData | Create Self-Controlled Risk Interval (SCRI) era data |
| createSeasonalityCovariateSettings | Create seasonality settings |
| createSimulationRiskWindow | Create a risk window definition for simulation |
| createStudyPopulation | Create a study population |
| cyclicSplineDesign | Create a design matrix for a cyclic spline |
| exportToCsv | Export SCCSresults to CSV files |
| fitSccsModel | Fit the SCCS model |
| getAttritionTable | Get the attrition table for a population |
| getDataMigrator | Get database migrations instance |
| getDbSccsData | Load data for SCCS from the database |
| getDiagnosticsSummary | Get a summary report of the analyses diagnostics |
| getFileReference | Get file reference |
| getModel | Output the full model |
| getResultsDataModelSpecifications | Get specifications for SelfControlledCaseSeries results data... |
| getResultsSummary | Get a summary report of the analyses results |
| hasAgeEffect | Does the model contain an age effect? |
| hasCalendarTimeEffect | Does the model contain an age effect? |
| hasSeasonality | Does the model contain an age effect? |
| isSccsData | Check whether an object is a SccsData object |
| isSccsIntervalData | Check whether an object is a SccsIntervalData object |
| loadExposuresOutcomeList | Load a list of 'ExposuresOutcome' from file |
| loadSccsAnalysisList | Load a list of sccsAnalysis from file |
| loadSccsData | Load the cohort method data from a file |
| loadSccsIntervalData | Load the cohort method data from a file |
| migrateDataModel | Migrate Data model |
| plotAgeEffect | Plot the age effect |
| plotAgeSpans | Plot the age ranges spanned by each observation period. |
| plotCalendarTimeEffect | Plot the calendar time effect |
| plotCalendarTimeSpans | Plot the calendar time ranges spanned by each observation... |
| plotEventObservationDependence | Plot time from event to observation end for censored and... |
| plotEventToCalendarTime | Plot the ratio of observed to expected events over calendar... |
| plotExposureCentered | Plot information centered around the start of exposure |
| plotSeasonality | Plot the seasonality effect |
| runSccsAnalyses | Run a list of analyses |
| saveExposuresOutcomeList | Save a list of 'ExposuresOutcome' to file |
| saveSccsAnalysisList | Save a list of SccsAnalysis to file |
| saveSccsData | Save the cohort method data to file |
| saveSccsIntervalData | Save the cohort method data to file |
| SccsData-class | SCCS Data |
| SccsIntervalData-class | SCCS Interval Data |
| SelfControlledCaseSeries-package | SelfControlledCaseSeries: Self-Controlled Case Series |
| simulateSccsData | Simulate SCCS data |
| uploadResults | Upload results to the database server. |
