createRunSelfControlledCohortArgs: Create a parameter object for the function...

In OHDSI/SelfControlledCohort: Population-Level Estimation Method that Estimates Incidence Rate Comparison of Exposed/Unexposed Time Within an Exposed Cohort

Create a parameter object for the function runSelfControlledCohort

Description

Create a parameter object for the function runSelfControlledCohort

Usage

createRunSelfControlledCohortArgs(
  firstExposureOnly = TRUE,
  firstOutcomeOnly = TRUE,
  minAge = "",
  maxAge = "",
  studyStartDate = "",
  studyEndDate = "",
  addLengthOfExposureExposed = TRUE,
  riskWindowStartExposed = 1,
  riskWindowEndExposed = 30,
  addLengthOfExposureUnexposed = TRUE,
  riskWindowEndUnexposed = -1,
  riskWindowStartUnexposed = -30,
  hasFullTimeAtRisk = FALSE,
  washoutPeriod = 0,
  followupPeriod = 0,
  computeTarDistribution = FALSE
)

Arguments

firstExposureOnly	If TRUE, only use first occurrence of each drug concept idfor each person
firstOutcomeOnly	If TRUE, only use first occurrence of each condition conceptid for each person.
minAge	Integer for minimum allowable age.
maxAge	Integer for maximum allowable age.
studyStartDate	Date for minimum allowable data for index exposure. Dateformat is 'yyyymmdd'.
studyEndDate	Date for maximum allowable data for index exposure. Dateformat is 'yyyymmdd'.
addLengthOfExposureExposed	If TRUE, use the duration from drugEraStart -> drugEraEnd as part of timeAtRisk.
riskWindowStartExposed	Integer of days to add to drugEraStart for start oftimeAtRisk (0 to include index date, 1 to start the dayafter).
riskWindowEndExposed	Additional window to add to end of exposure period (ifaddLengthOfExposureExposed = TRUE, then add to exposure enddate, else add to exposure start date).
addLengthOfExposureUnexposed	If TRUE, use the duration from exposure start -> exposureend as part of timeAtRisk looking back before exposurestart.
riskWindowEndUnexposed	Integer of days to add to exposure start for end oftimeAtRisk (0 to include index date, -1 to end the daybefore).
riskWindowStartUnexposed	Additional window to add to start of exposure period (ifaddLengthOfExposureUnexposed = TRUE, then add to exposureend date, else add to exposure start date).
hasFullTimeAtRisk	If TRUE, restrict to people who have full time-at-riskexposed and unexposed.
washoutPeriod	Integer to define required time observed before exposurestart.
followupPeriod	Integer to define required time observed after exposurestart.
computeTarDistribution	If TRUE, computer the distribution of time-at-risk and average absolute time between treatment and outcome. Note, may add significant computation time on some database engines. If set true in one analysis will default to true for all others.

Details

Create an object defining the parameter values.

OHDSI/SelfControlledCohort documentation built on Feb. 22, 2023, 5:44 p.m.