API for CloneFinder
Finding Subclones in SNP and Sequencing Data
| Global functions | |
|---|---|
| Clone | Source code |
| Simplices | Man page |
| Tumor | Man page Source code |
| Tumor-class | Man page |
| WeightVector | Man page Source code |
| WeightVector-class | Man page |
| coerce,Tumor,list-method | Man page |
| coerce,WeightVector,numeric-method | Man page |
| dataGen | Man page Source code |
| dbeta2 | Source code |
| estBetaParams | Source code |
| filterCN | Source code |
| filterMutations | Source code |
| findClones | Man page Source code |
| generateSimplex | Man page Source code |
| generateTumorData | Man page Source code |
| getClone | Man page Source code |
| plotTumorData | Man page Source code |
| psiFilter | Source code |
| psiOptim | Source code |
| psiPrior | Source code |
| rbeta2 | Source code |
| runAlg | Man page Source code |
| sampleSimplex | Man page Source code |
| seqDataGen | Source code |
| seqSeg | Source code |
| snpDataGen | Source code |
| summary,Tumor-method | Man page |
| tumorGen | Man page Source code |
