Man pages for aroma.tcga
Methods for accessing online The Cancer Genome Atlas (TCGA) data
| aroma.tcga-package | Package aroma.tcga |
| exportGenotypeCallsAndConfidenceScores.BroadBirdseedGenotypeTcgaDataFile | Exports genotype calls and confidence scores |
| exportGenotypeCalls.HudsonAlphaGenotypeTcgaDataFile | Exports genotype calls and confidence scores |
| fit.MultisourceCopyNumberChromosomalModel | Fits the model |
| getChromosomes.MultisourceChromosomalModel | Gets the chromosomes available |
| getNames.MultisourceChromosomalModel | Gets the names of the arrays |
| MultisourceChromosomalModel | The MultisourceChromosomalModel class |
| MultisourceCopyNumberChromosomalModel | The MultisourceCopyNumberChromosomalModel class |
| nbrOfArrays.MultisourceChromosomalModel | Gets the number of arrays |
| Non-documented_objects | Non-documented objects |
| parseTcgaDccArchiveName.character | Parses a TCGA DCC archive name |
| RawMultisourceCopyNumberModel | The RawMultisourceCopyNumberModel class |
| tcgaDccFullnameTranslator.character | Translates a TCGA DCC fullname |
